Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1288 ATGTCGATTGCAGAGGCTGCTTGCAGTTACGCCGTTATGATCCTTCACGACGACAAACTCCCTGTCACTGCTGAAAATATCTCGTCCTTGTTGAAAAGTGCCAAGGTGTCAGTTGAGTCATACTGGCCCAGCTTATTCGCTAAACTCGCTGAGAAAAGAAATGTTGAGGATTTGATAGCCAGCGGTGGAGGAGGTGGGGCTCCAGTTGCTGTTGCTGCCGCCCCTGTTGCCGCAGCCGGTGGTGGTGGTGGTGCAGCAGCAGCTCCTGCAGCTGAGGAGAAGAAGAAGGAAGAACCCCAAGAAGAGAGTGATGATGATATGGGATTCAGCTTATTTGACTAG 342 0.5146 MSIAEAACSYAVMILHDDKLPVTAENISSLLKSAKVSVESYWPSLFAKLAEKRNVEDLIASGGGGGAPVAVAAAPVAAAGGGGGAAAAPAAEEKKKEEPQEESDDDMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1288 113 Pfam 60s Acidic ribosomal protein 22 112 - -
Ahy16g1288 113 MobiDBLite consensus disorder prediction 79 113 - -
Ahy16g1288 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 106 - -
Ahy16g1288 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 106 - -
Ahy16g1288 113 Gene3D - 1 63 IPR038716 -
Ahy16g1288 113 CDD Ribosomal_P1 5 112 - -
Ahy16g1288 113 Hamap 50S ribosomal protein L12 [rpl12]. 6 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1288 Ahy-Chr16 24533511 24534820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1288 1 113 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.724 4.69e-36 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1288 K02942 - ncol:116248277 123.635