Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1251 ATGAGGCCGGTTTTCGTTGGGAACTTTGAGTACGATACTCGTCAGTCAGAGCTTGAACGCTTGTTCGCCAAGTATGGCAGGATTGAGCGCGTTGACATGAAATCTGGGTTTGCTTTTGTCTATTTTGAGGATGAGCGAGATGCTGAAGATGCAGTTCGTGCTCTTGACAACTTTCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGTGGTCGCCATCGTGATGGCTCAAGGTCAAACCAGAGGCCCACAAAAACACTATTTGTGATTAATTTTGATCCAATTCGCACCCGAGTTCGTGACATAGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGCATTCGTCGTAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATATTGGATAGAGTAGTGTCTGTTGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAGATATTATGACAGTCCTAGAAGAGGAGCTTATGGGAGATCACCCAGTCCAGGTTATAGGAGGAGACCAAGCCCTGACTATGGCCGTCCACGCAGTCCTGTATATGATAGGTACAATGGTCCAGCCTATGATAGGCGTAGGAGCCCTGAATATGATAGGCCTCGGAGCCCTGACTATGGTAGGAACAGGAGTCCTGAATATGGGAGACATCGCAGTCGAACACCAATTCGAAGATCCAGAACTTAG 753 0.4622 MRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYFEDERDAEDAVRALDNFPFGYEKRRLSVEWARGERGRHRDGSRSNQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDRYYDSPRRGAYGRSPSPGYRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPEYDRPRSPDYGRNRSPEYGRHRSRTPIRRSRT* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1251 250 MobiDBLite consensus disorder prediction 209 241 - -
Ahy16g1251 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Ahy16g1251 250 MobiDBLite consensus disorder prediction 166 250 - -
Ahy16g1251 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Ahy16g1251 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Ahy16g1251 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Ahy16g1251 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 203 - -
Ahy16g1251 250 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Ahy16g1251 250 Gene3D - 1 83 IPR012677 -
Ahy16g1251 250 Gene3D - 84 173 IPR012677 -
Ahy16g1251 250 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 203 IPR029537 GO:0000398|GO:0005681
Ahy16g1251 250 SMART rrm1_1 3 70 IPR000504 GO:0003723
Ahy16g1251 250 SMART rrm1_1 92 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1251 Ahy-Chr16 23196890 23199675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1251 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.731 1.24e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1251 K12893 - gmx:100797709 402.519