Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1237 ATGGCGAATCTGGAGTGCAATCTGAGGGGACCTCCCACTCCTACAGCTCAAACAGTTTGGATAGGTGAGGGAGATGAAGATCTCTACACAGAGCTATGGAAGCTGTGTGCAGGGCCTCTCGTCGATGTTCCCCGCACTGGGGAGAGAGTCTACTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAGGTGAACCAAGAACTGAGTCAGCAAATCCCTCATTTCAATCTCCCAACCAAGATTCTCTGCCGTGTTGTTCACATTCAGTTGCTGGCGGAACAGGAAACTGATGAAGTTTATGCCCGTATCACTTTGCTTCCAGAACCAGATCAAAAAGAGCCTACAATCCCTGATCCAAGTCCCGTGGAATCTCAAAGAGAAACGTTTCACTCTTTTAGCAAGATATTAACTCCCTCTGATACTAGCACACATGGAGGATGTTCAATTCGGCGTATGCATGCCACAGAGTGCCTACCTCCATTGCCATCACCTCCATCGGACGCGGATGAAAATTCCCCACCACCATCCCAGGAGTTGGTGGCGAAGGATCTTCATGGGTTCGAGTGGAAGTTTAAGCATGTATTAAGAGGTAAAGGAGATAAAGGAGGTAAAGGGGGTAAAGGAGGTTCACCAAAGAGGCACTTGTTCACAACTGGCTGGAGTACCTTTGTCACTTCCAAAAGACTGGTTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAAGATGGGGAAATGAGAGTTGGGATTAGGCGACTTGCGCGGCAGCAGATCCCAATGCCTTCGTCCGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGCACCATGTTTGTGGTTTATTATAAACCAAGGAGTAGCCAGTTTATTATTGGCCTTAACAAATATCTGGAAGCAGTCAAAAATAAATTTACTGCTGGAATGCGTTACAAGATGAGGTTTGAAGTGGAAGAATCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCGCCAGGATGGTCAAACTCTCAATGGCGTTCCTTGAAGGTTCATTGGGATGAGCCGGCAACGTTTCCGAGACCAGAGAGGGTTTCTGCTTGGGAGATAGAGCCTTTTGTTGTCTCTACTGCGTTGGCCAAAAGGCCCAGGCATGCTGATCATACTTCATCGTCTGAAATTGCTTCCAACACTCCTGCTTCTGCTTTTTGGTTTCATGGATCATCCATGTCCCATGATCCTGCAGAATTAGGTGGTGCTGAAGTCCAATGCAAGGAAAACCAGGTTGTATGGTCCTTGAGGCAGAAAGAAACCAATGGCAATCCCATGAATAGCCACTCCAGTAGCTCTCGGGTTCGTATGGAAGGAATATGGTCTAATTCACCACATGCGAGTGTCCCACCAAACCCCCCAAACAACAATGCTGCTGCAAAACAAGGCCTTTCACCTATTTCATCCAAACCAAATGATGATGGTTTGACTCATGATAAAGTTGAAGTAGATGCTAGAAAGAAGACTGAGAATCCCACAAAGATCTTTTTATTTGGAGTTAATTTGACTAACAACTTCCGTAGTAATGTGTCCCATCCGGAGAAAGAACAGGCTTGCTCTGCCATTGTTCCCGTTGGTCCCAAAGAATCTACTCCCATTACCATTACTGCATCAGCCACTCAGAATGCTCAGAATTCCAACTATTCAGTGTCCGATAAGGAGCAACAGAACCAAATTTCTTCTGATGTATTGCCAGCAGAGAAGCCTAACAAGCTGGCATCCTTACCATCCATGAGGACTCGAACTAAGGTTCAAATGCAAGGTGTAGCTGTAGGGAGAGCTGTGGACCTAACCATGTTGAATGGCTATGACGAGCTTACAATTGAGCTTGAGAAACTGTTTCATATTGAGGGAGAACTCAGATCACAAAACAAATGGGCAGTTACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGCAACATTGTGAAACGGATTTACATTTATTCAAGGGAGGATGTGAAGAAGATGAAGTATAAACTCTCCGTGCCTTCGTTGGACTGCGAAGAGACTTTGTTGTCGAAAGAAGAGACTTAA 2148 0.4562 MANLECNLRGPPTPTAQTVWIGEGDEDLYTELWKLCAGPLVDVPRTGERVYYFPQGHMEQLQASTNQEVNQELSQQIPHFNLPTKILCRVVHIQLLAEQETDEVYARITLLPEPDQKEPTIPDPSPVESQRETFHSFSKILTPSDTSTHGGCSIRRMHATECLPPLPSPPSDADENSPPPSQELVAKDLHGFEWKFKHVLRGKGDKGGKGGKGGSPKRHLFTTGWSTFVTSKRLVAGDAFVFLRGEDGEMRVGIRRLARQQIPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRSSQFIIGLNKYLEAVKNKFTAGMRYKMRFEVEESPERRFSGTIVGVGDVSPGWSNSQWRSLKVHWDEPATFPRPERVSAWEIEPFVVSTALAKRPRHADHTSSSEIASNTPASAFWFHGSSMSHDPAELGGAEVQCKENQVVWSLRQKETNGNPMNSHSSSSRVRMEGIWSNSPHASVPPNPPNNNAAAKQGLSPISSKPNDDGLTHDKVEVDARKKTENPTKIFLFGVNLTNNFRSNVSHPEKEQACSAIVPVGPKESTPITITASATQNAQNSNYSVSDKEQQNQISSDVLPAEKPNKLASLPSMRTRTKVQMQGVAVGRAVDLTMLNGYDELTIELEKLFHIEGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIYIYSREDVKKMKYKLSVPSLDCEETLLSKEET* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1237 715 Pfam Auxin response factor 282 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy16g1237 715 PANTHER AUXIN RESPONSE FACTOR 11 15 700 - -
Ahy16g1237 715 Gene3D - 603 695 - -
Ahy16g1237 715 SMART B3_2 137 258 IPR003340 GO:0003677
Ahy16g1237 715 Gene3D - 134 257 IPR015300 -
Ahy16g1237 715 ProSiteProfiles B3 DNA-binding domain profile. 137 258 IPR003340 GO:0003677
Ahy16g1237 715 ProSiteProfiles PB1 domain profile. 607 690 IPR000270 GO:0005515
Ahy16g1237 715 Pfam AUX/IAA family 574 689 IPR033389 -
Ahy16g1237 715 MobiDBLite consensus disorder prediction 481 500 - -
Ahy16g1237 715 SUPERFAMILY CAD & PB1 domains 602 683 - -
Ahy16g1237 715 MobiDBLite consensus disorder prediction 469 505 - -
Ahy16g1237 715 Gene3D - 317 389 - -
Ahy16g1237 715 MobiDBLite consensus disorder prediction 445 464 - -
Ahy16g1237 715 Pfam B3 DNA binding domain 137 256 IPR003340 GO:0003677
Ahy16g1237 715 CDD B3_DNA 135 256 IPR003340 GO:0003677
Ahy16g1237 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 700 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy16g1237 715 MobiDBLite consensus disorder prediction 160 183 - -
Ahy16g1237 715 SUPERFAMILY DNA-binding pseudobarrel domain 128 285 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1237 Ahy-Chr16 22913000 22917448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1237 24 694 B3 DNA Binding Superfamily AT4G23980 51.988 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy16g1237 AUX_IAA 7.30E-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1237 K14486 - gmx:100820503 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1237 16 22913000 22917448 Ahy4g0867 4 14597205 14597446 hybridization