Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1231 ATGGAACAGCATCATCTGCCACCGCCCACCAATAACACCCGTGGTGGCACGCGCCACCCTCTCTACCGCGGCGTCAGGAAGCGCCGCTGGGGCAAGTGGGTTTCCGAGATTCGAGAGCCTCGCAAGAAATCCCGCATATGGCTCGGTTCCTTCCCTGTCCCCGAAATGGCTGCCAAGGCATACGACGTCGCAGCCTACTGCCTTAAAGGCCGTAAGGCGCAGCTCAACTTCCCCGACCAGGTCCACCTCCTCCCGCCGCTCCCCTCCACCTGCTCCGCCAGGGACATCCAGGTCGCCGCCGCCAAGGCCGCCAACTCCGTGAAGGATTCTGTCGCTTCCACCCGCGGTGGTGCCGATGATGAGGATGATTTCTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGTGGTTGCTGGAGCTCTCCGAGTGGGTCGTCGTGGACTACTTCCTCCGGCGACATCACGGCGTGGCCGGAGGTGGAGCAACCCTTCACGGCGTGTCTATGA 513 0.6316 MEQHHLPPPTNNTRGGTRHPLYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDQVHLLPPLPSTCSARDIQVAAAKAANSVKDSVASTRGGADDEDDFWGEIELPELMDGECGCWSSPSGSSWTTSSGDITAWPEVEQPFTACL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1231 170 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Ahy16g1231 170 MobiDBLite consensus disorder prediction 1 20 - -
Ahy16g1231 170 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Ahy16g1231 170 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Ahy16g1231 170 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Ahy16g1231 170 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Ahy16g1231 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 170 - -
Ahy16g1231 170 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Ahy16g1231 170 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Ahy16g1231 170 MobiDBLite consensus disorder prediction 1 17 - -
Ahy16g1231 170 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 170 - -
Ahy16g1231 170 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1231 Ahy-Chr16 22785356 22786120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1231 17 170 AP2-EREBP Transcription Factor Family AT1G01250 62.874 4.94e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g1231 AP2 2.70E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1231 K09286 - gmx:100819971 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1231 16 22785356 22786120 Ahy6g0190 6 2356878 2357749 hybridization
Ahy16g1231 16 22785356 22786120 Ahy12g0343 12 4949817 4950628 PCT
Ahy12g0343 12 4949817 4950628 Ahy16g1231 16 22785356 22786120 PCT