Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1218 ATGATAATAAAGCGCAATTTGAAAACCGGAATCCATACCCTCAAATGCTGTAGTAAGCTAGCAGAATCCAAGAAGCGCAAGCTCGATCAAGTTTACACTCAACCCACTCCAACGCCACCTGCTGAGCTCAATCATGATCCAGTGCGCTCACCCCCACGCCGCACTAGGATTCTTCCCTCCAGGTTCAGCGATTCTGTTCTTGACACCTGGACACATCACTGTGATTCGGACTACCACCACTGTCTCAATTCAGTTAAGACGGTTAAAACAAGCGTTAACGGAATCCGTTCTACTCTCCTCAAAACTGAGATTAACTGCAGAAAGAGGAAGGACGTGTACAAGCTCGACGAATTTGTGTTGGGTGACATAGTTTGGGCAAAATGCGGCAAGAGCTACCCGCCTTGGCCTGCTCTCGTTATTGATCCTCTCTTGCAAGCTCCCAAATCCGTCCTCAGCCGCTGCATTCCCGGCGCGATTTGCGTTATGTTCTTTGGCTATTCCAAAAGCGGAAAGCAGCGGGATTATGCATGGGCGAAGCAGGGAATGTTATTCCCCTTCTTGGAGTTCATGGATAGATTCCAGGGGCAGACTCAGTTGTACAAGAGCAAGACAAGTGAGTTTCAAATGGCTATGGAGGAGGCCATGTTGGCGGAAGATGGAATTCTGGACACACAATTGCTACCCGAGCAAATTGGCGAGCATATGAAAGGTGCAGGTTCCAATGCTGAGCAAGACCATTACAGCCAATGCCAGGATGCGATATCCTGTGCTGGGTGCGGTTTGATGTTGCGGGTTAAACCCAAGAAGAAGATGAAGGATTCACCTCTACCTTATTGTAAACACTGTGATAAGTTACAAAAATCAAAACAATATTGCGGCATTTGCAAGAAGATTTGGCACCACTCGGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAATGTGACAAAATTTCCAGCAAACTTCTCAAGGATTTGGAAAATATGGATTACTATTGCCCAGACTGCAAGGGAAAGTTCAATTATAAATTAACATCACCTCAAATCTACAAGTCAAAAGTAAAATCAACAGAGAGTAGCAAAAAACCTGAAATACCTGAAGAGCTAGCGGTGGTATGCAATGACATGAAAGGAATTTACCTTCCAAAGCTTCATTTGGTTATGTGCAAGTGCAGCTCTTGCGGTACAAGAAAGTATAATCTTCCTGAATGGGAACGACATTCAGGATGCAAAGCCAAAAAATGGAAACATACTGTGAAAGTGGAAAGCACAATGCTACCGCTAATAAAATGGATCACCAAACACAATTCACGAGCTGGAGCTCGCCTGGATCAGCAGCAGTTGATTTCCTTCTTGCAAGAGCAGTACGAGCCAGTTTATGCAAAATGGACTACAGAAAGATGTGCCATTTGTAGATGGGTTGAAGACTGGGATGACAACAAAATTATTATCTGTAACAGGTGTCAAATTGCTGTCCATCAAGAATGCTACGGGGCAAAGAATGTTAAGGATTTTACTTCTTGGGTTTGTAGAGTCTGTGAAACTCCTGACATTGAGAGAGAGTGTTGCCTCTGTCCAGTTAAAGGTGGTGCTCTTAAGCCAACCGATGTGGACATGTTGTGGGTTCACGTAACATGTGCTTGGTTTCAGCAGGAAGTTCTTTTCAGAAACCACGAGGCGATGGAACCAGCCGTTGGAATCCTTAAAATTCCTCCTGAATCCTTTCTTAAGACTTGCGTGATATGTAAACAAAGTCATGGTTCGTGTACAAATTGTTGCAAGTGTGCAACATATTTTCATGTTATGTGTGCCTCAAGAATGGGATATAGCATGGAATTGCATTCTGTTGAGAAGAATGGAAAACAAAAAACACAGAAGCTAATTTATTGTAAATTTCACAGGGTGCCAAAGCCAGAGGCAGTACTAGTTGTACATACAGATGAGGGAGTATTCTCTCAAAATAAGGAGGGATGCTATAAGGGATCAAATCTCGTTTCCTCATCCAACAATATTGAACTCCTTGTTGATTCCTCAAAATCTCATAGTTATGAGGTTGAGCCACTCTCTGCTGCCAGGTGTCGTGTCTACGTAAGGTCTTCCAAGAAGAGCAATACTGTCCCAGTAATGCACTTGCTTGGGGGTCCAAATCTCCATTCTTTAGATGCTATAGCTAAACTGGCCAGCAACGAGGATGCTGAAGCATTTTCTTCTCTAAAAGAACGTCTTCACCATTTACAGAAAACTGAAAGCAGTAGAGTTTGCTTAGGAAAATCGGGTGTCCATGGATGGGGCCTCTTTGCTCGAAGAGAATTACAAGAAGGAGAAATGGTTGTTGAGTACCGTGGCGAGCATGTTAGGCGCAGTGTTGCTGATCTGAGGGAAGCTAAGTATCGTTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGACGTGGTAATCGACGCAACTGAAAAGGGCAATATTGCACGTTTGATAAACCATTCTTGCAACCCGAACTGCTATGCAAGGATAATGAGTCTGAATGATCAAGAGAGTCGGATTGTTCTTATTGCCAAGACCGATCTTTCTGCGGGTGAAGAATTAACGTATGATTACTTGTTCGATCCAGATGAGAGGAATGAACTCAAAGTTCCCTGCCGATGTGGAGCCCCCAATTGTAGAAAGTTTATGAACTAA 2700 0.4367 MIIKRNLKTGIHTLKCCSKLAESKKRKLDQVYTQPTPTPPAELNHDPVRSPPRRTRILPSRFSDSVLDTWTHHCDSDYHHCLNSVKTVKTSVNGIRSTLLKTEINCRKRKDVYKLDEFVLGDIVWAKCGKSYPPWPALVIDPLLQAPKSVLSRCIPGAICVMFFGYSKSGKQRDYAWAKQGMLFPFLEFMDRFQGQTQLYKSKTSEFQMAMEEAMLAEDGILDTQLLPEQIGEHMKGAGSNAEQDHYSQCQDAISCAGCGLMLRVKPKKKMKDSPLPYCKHCDKLQKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLKDLENMDYYCPDCKGKFNYKLTSPQIYKSKVKSTESSKKPEIPEELAVVCNDMKGIYLPKLHLVMCKCSSCGTRKYNLPEWERHSGCKAKKWKHTVKVESTMLPLIKWITKHNSRAGARLDQQQLISFLQEQYEPVYAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDIERECCLCPVKGGALKPTDVDMLWVHVTCAWFQQEVLFRNHEAMEPAVGILKIPPESFLKTCVICKQSHGSCTNCCKCATYFHVMCASRMGYSMELHSVEKNGKQKTQKLIYCKFHRVPKPEAVLVVHTDEGVFSQNKEGCYKGSNLVSSSNNIELLVDSSKSHSYEVEPLSAARCRVYVRSSKKSNTVPVMHLLGGPNLHSLDAIAKLASNEDAEAFSSLKERLHHLQKTESSRVCLGKSGVHGWGLFARRELQEGEMVVEYRGEHVRRSVADLREAKYRLEGKDCYLFKISEDVVIDATEKGNIARLINHSCNPNCYARIMSLNDQESRIVLIAKTDLSAGEELTYDYLFDPDERNELKVPCRCGAPNCRKFMN* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1218 899 CDD SET_SETD1-like 746 895 - -
Ahy16g1218 899 SUPERFAMILY FYVE/PHD zinc finger 472 536 IPR011011 -
Ahy16g1218 899 ProSitePatterns Zinc finger PHD-type signature. 474 519 IPR019786 -
Ahy16g1218 899 ProSiteProfiles Extended PHD (ePHD) domain profile. 525 640 IPR034732 -
Ahy16g1218 899 ProSiteProfiles SET domain profile. 757 874 IPR001214 GO:0005515
Ahy16g1218 899 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 899 - -
Ahy16g1218 899 ProSiteProfiles Post-SET domain profile. 883 899 IPR003616 -
Ahy16g1218 899 Pfam PHD-finger 291 344 IPR019787 -
Ahy16g1218 899 ProSiteProfiles Zinc finger PHD-type profile. 471 522 IPR019787 -
Ahy16g1218 899 CDD PHD_ATX3_4_5_like 473 519 IPR042011 -
Ahy16g1218 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 522 IPR013083 -
Ahy16g1218 899 SUPERFAMILY FYVE/PHD zinc finger 288 349 IPR011011 -
Ahy16g1218 899 SMART PostSET_3 883 899 IPR003616 -
Ahy16g1218 899 Pfam PWWP domain 121 217 IPR000313 -
Ahy16g1218 899 SMART PHD_3 291 343 IPR001965 -
Ahy16g1218 899 SMART PHD_3 473 520 IPR001965 -
Ahy16g1218 899 SMART PHD_3 584 640 IPR001965 -
Ahy16g1218 899 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 899 IPR025780 -
Ahy16g1218 899 PANTHER PHD FINGER PROTEINS 1 899 - -
Ahy16g1218 899 MobiDBLite consensus disorder prediction 27 52 - -
Ahy16g1218 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 348 IPR013083 -
Ahy16g1218 899 SUPERFAMILY SET domain 751 896 IPR046341 -
Ahy16g1218 899 SUPERFAMILY Tudor/PWWP/MBT 117 221 - -
Ahy16g1218 899 Pfam PHD-zinc-finger like domain 527 639 - -
Ahy16g1218 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 523 641 IPR013083 -
Ahy16g1218 899 SMART set_7 757 880 IPR001214 GO:0005515
Ahy16g1218 899 Gene3D SET domain 735 899 IPR046341 -
Ahy16g1218 899 ProSiteProfiles PWWP domain profile. 120 189 IPR000313 -
Ahy16g1218 899 Gene3D - 113 220 - -
Ahy16g1218 899 Pfam SET domain 768 873 IPR001214 GO:0005515
Ahy16g1218 899 Pfam PHD-finger 486 520 - -
Ahy16g1218 899 ProSiteProfiles Zinc finger PHD-type profile. 289 345 IPR019787 -
Ahy16g1218 899 SMART PWWP_4 118 187 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1218 Ahy-Chr16 22322337 22327891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1218 474 626 C2H2 Transcription Factor Family AT3G14740 34.375 2.27e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy16g1218 zf-HC5HC2H_2 3.10E-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1218 - - lja:Lj1g3v5034780.1 1281.16