Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1195 ATGTGCAGAAAAACTGTGATATGCAAAGTTCGCGAACCCGGTGTTGGTGATACTCTCAATGCAGAAACAACACCCAAGGTTGTTCGTGTTTCAGTAATGGATCCGGAGATTACTGATTCTTCGAGTGACGAGGAGGAATATCAACAGTATCAAGGACGAAGCAAAGTGAAACACATTGTAAACGAGATAAGAATTTTGTATCCGCCATCTCACAACACCACCAAGGTGCAAAGATCTAAACAGCAACAACAACAGAACAAGGGTAAAAAGGTGGTTGTGGCTGCCATGAAAGCTGCTTCTTCTTCTCAAGAGGGTAGGAAGCTACGCGGGGTTAGGCAAAGGCCATGGGGGAGATGGGCTGCAGAGATCCGAGACCCTGTGAAGCGTACGAGGTTGTGGTTAGGAACCTACGACACTGCCGAAGAAGCCGCCATGGTTTATGACAGAGAAGCCATTCGCCTTCGAGGTTCTCATGCTCAAACTAATTTTCTCAAGCCTCCTAAGGAGGAAGAATATGAACAAGTTTTTGATACCAACAATATGAAGAACATGCCTTCTCCTACTTCTCCCACTTCTGTTCTTCTATTTCAGTCTGATGGATCTGGAAGTAAGGTTTTAGGAGAGGATCAAAGCGAGTTCAGAGATGAATCTCCTTCTTCTTATTTTCAGGATGCATTGTTTTTAGATTCACCTTCTCTTGATTTTTGTTTATCGGATTTTGAGACTCCTCCCCCAATATTTCTTGATGAAACTTGTCTACCCCATTTTATTTTTAGTGACAGCAATTTCAGTGATGCTACCATTGAGCAGTCTATTGAATTATGTAACTTGGATGTAGATGATTACTTTTGCAGTCACACGCCAAATTAA 870 0.4253 MCRKTVICKVREPGVGDTLNAETTPKVVRVSVMDPEITDSSSDEEEYQQYQGRSKVKHIVNEIRILYPPSHNTTKVQRSKQQQQQNKGKKVVVAAMKAASSSQEGRKLRGVRQRPWGRWAAEIRDPVKRTRLWLGTYDTAEEAAMVYDREAIRLRGSHAQTNFLKPPKEEEYEQVFDTNNMKNMPSPTSPTSVLLFQSDGSGSKVLGEDQSEFRDESPSSYFQDALFLDSPSLDFCLSDFETPPPIFLDETCLPHFIFSDSNFSDATIEQSIELCNLDVDDYFCSHTPN* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1195 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 283 - -
Ahy16g1195 289 CDD AP2 107 163 IPR001471 GO:0003700|GO:0006355
Ahy16g1195 289 Gene3D AP2/ERF domain 107 165 IPR036955 GO:0003700|GO:0006355
Ahy16g1195 289 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Ahy16g1195 289 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Ahy16g1195 289 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Ahy16g1195 289 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Ahy16g1195 289 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Ahy16g1195 289 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 283 - -
Ahy16g1195 289 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1195 Ahy-Chr16 21674193 21675400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1195 4 198 AP2-EREBP Transcription Factor Family AT4G27950 44.660 1.68e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy16g1195 AP2 8.50E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1195 - - adu:107491972 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1195 16 21674193 21675400 Ahy6g0223 6 2813435 2814657 hybridization