Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1191 ATGCCGAAGAACAAGGGAAAGGGAGGGAAGAACAGGAAGAGGGGGAAGAACGAAGCGGACGACGATAAGAGAGAGCTGGTTTTCAAGGAGGACGGACAGGAATACGCGCAGGTCCTCCGTATGCTCGGTAACGGCCGCTGTGAAGCAATGTGCATCGACGGCATCAAGAGGCTCTGTCATATCAGAGGCAAGATGCACAAAAAGGTGTGGATCGCCACCGGTGACATCATCCTCGTCGGCCTCCGCGACTTCCAGAACGACAAGGCTGACGTTATCCTCAAGTACATGGCTGACGAGGCCAGACTTCTCAAGGCCTATGGCGAGCTCCCTGACACCACACGCCTCAACGAGACCGTCGGTGGTGGCCTCGAGGACGACGATGACCAGATTGGCGACGACTACGTCGAGTTCGAGGATGAGGATATCGATAAAATCTAA 438 0.5525 MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCHIRGKMHKKVWIATGDIILVGLRDFQNDKADVILKYMADEARLLKAYGELPDTTRLNETVGGGLEDDDDQIGDDYVEFEDEDIDKI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1191 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Ahy16g1191 145 Gene3D - 2 145 IPR012340 -
Ahy16g1191 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Ahy16g1191 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Ahy16g1191 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A 1 145 - -
Ahy16g1191 145 MobiDBLite consensus disorder prediction 1 24 - -
Ahy16g1191 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Ahy16g1191 145 Coils Coil 135 145 - -
Ahy16g1191 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Ahy16g1191 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Ahy16g1191 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Ahy16g1191 145 SUPERFAMILY Nucleic acid-binding proteins 2 143 IPR012340 -
Ahy16g1191 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1191 Ahy-Chr16 21603608 21604466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1191 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 87.586 5.14e-86 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1191 K03236 - thj:104808868 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1191 16 21603608 21604466 Ahy6g0227 6 2841697 2842512 hybridization