Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1132 ATGGATCATTATTATTATTATAATAATTATTATTCATCGTTCTCTGTTCCAGCACCATATGCAACTACATCAAACTTTAATCAATCCCTTCCCTTCAACGAAAATGACTCCGAGGAAATGCTTCTATGCGAGGTTCTTGCACAGGGAAGTGGCGGTGATGCAGCGGAAAACTCCTCCACCGAAGAGGTGAACTCAACCACGGCGGCGCTGCAGCCACAACAACCATCTTACAGAGGGGTAAGAAGGAGGCCATGGGGAAAGTACGCGGCAGAGATAAGGGACTCGACGAGGAACGGCGAGAGGGTATGGTTGGGAACCTTTGATACGGCGGAGGAAGCTGCTTTGGCTTACGACCAAGCGGCATTGGCAAGTAGAGGATCAGTGGCGGTTTTGAACTTCCCGGCAGGGATGGTTGTTGAATCGCTAGAGAAGATGATGATGGAGTGTGGTGGGTTTAGTGAAGATTGTTCTCCGGTGTTGGAGCTGAAGAAGAAGCATTCCATGAAGAGGAAGATGGAGAACAGGGAGAAGAAACTGCTCATGATGATGAATACAAATAATAACAATCATCATAATCATGTCATGGTATTCCAGGATTTGGGTGCTGACTATTTGGAACAACTTCTTACAATCTCGTCCAACGATGCAATGCTATAG 657 0.4627 MDHYYYYNNYYSSFSVPAPYATTSNFNQSLPFNENDSEEMLLCEVLAQGSGGDAAENSSTEEVNSTTAALQPQQPSYRGVRRRPWGKYAAEIRDSTRNGERVWLGTFDTAEEAALAYDQAALASRGSVAVLNFPAGMVVESLEKMMMECGGFSEDCSPVLELKKKHSMKRKMENREKKLLMMMNTNNNNHHNHVMVFQDLGADYLEQLLTISSNDAML* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1132 218 CDD AP2 75 135 IPR001471 GO:0003700|GO:0006355
Ahy16g1132 218 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Ahy16g1132 218 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Ahy16g1132 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 24 211 - -
Ahy16g1132 218 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Ahy16g1132 218 Pfam AP2 domain 75 126 IPR001471 GO:0003700|GO:0006355
Ahy16g1132 218 Gene3D AP2/ERF domain 76 135 IPR036955 GO:0003700|GO:0006355
Ahy16g1132 218 MobiDBLite consensus disorder prediction 52 74 - -
Ahy16g1132 218 MobiDBLite consensus disorder prediction 50 79 - -
Ahy16g1132 218 PANTHER DNA-BINDING DOMAIN 24 211 IPR044808 GO:0003700|GO:0009873
Ahy16g1132 218 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
Ahy16g1132 218 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1132 Ahy-Chr16 20493050 20493897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1132 30 214 AP2-EREBP Transcription Factor Family AT3G23240 51.323 1.17e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g1132 AP2 1.10E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1132 K14516 - qsu:112003251 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0909 12 18158836 18160014 Ahy16g1132 16 20493050 20493897 ECH
Ahy16g1132 16 20493050 20493897 Ahy16g1132 16 20493050 20493897 ECH
Ahy16g1132 16 20493050 20493897 Ahy6g0270 6 3355096 3356039 hybridization
Ahy16g1132 16 20493050 20493897 Ahy12g0908 12 18138829 18146752 PCT
Ahy16g1132 16 20493050 20493897 Ahy2g0765 2 13757297 13758244 PCT