Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1116 ATGTCAAATAACAGCACAAATGGAGGTAAGAAGAGAAAACTCTGTCCACCAAAAGAATCCGAAGATTGGTGCTTTGAATGCAAGGATGGTGGAGAAGTCATTGTATGCGATCGCAGGAACTGTGTGAAGGTTTATCACTCCTACTGTGTTCCTGTTACCCCTGAGAAGGACAAATCTTGGATTTGTGCTTGGCATTATTGCTTCGAATGCAAGGAATCCGCAAAGTTTTATTGCCTTGGTTGTCCAAATGCTTTGTGCAAAGAGTGCTTGGCTTCCTCAGAATTTATCACTGTCAAGGGTGATAAAGGATTATGCTGCAACTGCGCGCCGCTAGTCAAAATTATAGAACAAAATTTGGACCGTGACTCTCAGGGGAACAAGATAAGCGTGGATGGAAGAGATACATATGAGGGTCTATTCAAGGAATACTGGGAAATTATTAAGCTAAACGAAGGATTAACTAGTGATGATATCTCTGCTGCACAAACCAACTACAACAAAATGGTTAAAAATTCTCCAGATCAAAGCAAAGTCATTGATGTAGATAAAGAAAGTCAGAATGACTCCATGTCATCGGACGGCAATGAAGCTTTTATGTATAAACACAACTCAACCAAAAGGAAGCAGTCCAGTTCACTGGAGTTTATGGGATGGGGATCGAAACCTCTCCTTAGCTTCCTTGCGTCCATTGGAAAATTTAGTACTGAACCATTGTCACAGTGGGATATACGGACTCTTGTGTGTGAATACATTGAGAAGAACAATCTCTATCTCTCGCAAGATAAGAGGAAGTTCCTCCTTGATGAAAAGTTGTTTCCTATATTCGGAAAAAAGGTTATGTCAAAAAATCAAATATATCCTCTATTGGAACTTCACTTTGCTGAAAAGTCGGGTGATAGAGATGGTGAAGAAAACAATTATGAAATCATAAGCACTCCTCCAGACAAGGGTCTCAGTGCTCAGACTTCATGTAGGGAAAGGAGATTGTCAAGCTCGAAAGGAAAACTTCAATTGGAAAAGGAGGACTTGTCTATCAAGGCTAGTCGTTTTGCTTCCATAAGTGCCAGTAATATAAGACTTATTTACTTAAGACAAAGATTGGTGCTAGAGTTATCTAAACAACTTGAAAGTTTTATGGGTAAGGTTGTTGGAGCCTTGGTTAGAGTTAAAATGGATTCCAGTGATTGTATGCAGACGAGGTCTTACCATCTTGTGAGAGTTACAGGTGTTGTATTGGAGGATGATGTTAAGAGAATTCTTTTGCAAGTTTCCTTCATGTCTAAAGCCATCCCTATCTCCGAGCTTTCTGATAATGACTTCACAGAGCAAGAATGTGAGGATTTGCGGCTAAAAGTGAAAGCCAACCTGCTGCAGAAACTAACTGTTGTGGAGCTTCAAGAAAAGGCAAAAAGTCTTCATGAGGATATAACAAAGCATTGGATCGCGACTCGACTAACCTATTTGCAAAATCAAATTGACCGTGCAAACCTGAGGGGAAGACAAAGAGAAAAATTTGCCTTACTAGATGAAAGGGAAGAACTTCAACAACCATGGAAGCAAGAAGAGTTGTTAAAGCGAGTTCCTTCAGTTTCCCCAGAGTTTACTACAGAGCCACACAATGATCCTGAAGAGAACTAA 1638 0.4011 MSNNSTNGGKKRKLCPPKESEDWCFECKDGGEVIVCDRRNCVKVYHSYCVPVTPEKDKSWICAWHYCFECKESAKFYCLGCPNALCKECLASSEFITVKGDKGLCCNCAPLVKIIEQNLDRDSQGNKISVDGRDTYEGLFKEYWEIIKLNEGLTSDDISAAQTNYNKMVKNSPDQSKVIDVDKESQNDSMSSDGNEAFMYKHNSTKRKQSSSLEFMGWGSKPLLSFLASIGKFSTEPLSQWDIRTLVCEYIEKNNLYLSQDKRKFLLDEKLFPIFGKKVMSKNQIYPLLELHFAEKSGDRDGEENNYEIISTPPDKGLSAQTSCRERRLSSSKGKLQLEKEDLSIKASRFASISASNIRLIYLRQRLVLELSKQLESFMGKVVGALVRVKMDSSDCMQTRSYHLVRVTGVVLEDDVKRILLQVSFMSKAIPISELSDNDFTEQECEDLRLKVKANLLQKLTVVELQEKAKSLHEDITKHWIATRLTYLQNQIDRANLRGRQREKFALLDEREELQQPWKQEELLKRVPSVSPEFTTEPHNDPEEN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1116 545 Gene3D SWIB/MDM2 domain 204 302 IPR036885 -
Ahy16g1116 545 CDD Bbox1 67 92 - -
Ahy16g1116 545 CDD SWIB-MDM2_like 218 293 - -
Ahy16g1116 545 SUPERFAMILY FYVE/PHD zinc finger 19 71 IPR011011 -
Ahy16g1116 545 SMART rtf1 352 454 IPR004343 GO:0003677
Ahy16g1116 545 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 11 535 - -
Ahy16g1116 545 Gene3D - 353 474 IPR036128 GO:0003677
Ahy16g1116 545 ProSiteProfiles SWIB/MDM2 domain profile. 212 295 IPR003121 -
Ahy16g1116 545 PANTHER OS01G0884500 PROTEIN 11 535 IPR045894 -
Ahy16g1116 545 SUPERFAMILY SWIB/MDM2 domain 206 295 IPR036885 -
Ahy16g1116 545 SUPERFAMILY Plus3-like 354 475 IPR036128 GO:0003677
Ahy16g1116 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 112 IPR013083 -
Ahy16g1116 545 ProSiteProfiles Plus3 domain profile. 352 477 IPR004343 GO:0003677
Ahy16g1116 545 MobiDBLite consensus disorder prediction 300 324 - -
Ahy16g1116 545 Pfam SWIB/MDM2 domain 223 293 IPR003121 -
Ahy16g1116 545 Pfam Plus-3 domain 357 451 IPR004343 GO:0003677
Ahy16g1116 545 SMART PHD_3 23 66 IPR001965 -
Ahy16g1116 545 MobiDBLite consensus disorder prediction 519 545 - -
Ahy16g1116 545 CDD PHD5_NSD 23 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1116 Ahy-Chr16 20235680 20239988 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1116 7 90 PHD Transcription Factor Family AT3G14980 31.522 2.80e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ahy16g1116 Plus-3 5.40E-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1116 16 20235680 20239988 Ahy6g0281 6 3499739 3504065 hybridization