Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1100 ATGAAGATCTTGACTGAGCGTGGATACTCTTTCACGACATCAGCTGAGCGTGAAATTGTGAGAGACATGAAGGAGAAGCTAGCTTATATTGCTCTTGATTATGAGCAAGAGCTAGACACTGCGAAGACTAGCTCAGCTGTTGAAAAGAGTTATGAGCTACCAGATGGACAGGTTATCACAATAGGAGCTGAAAGATTTCGATGCCTTGAAGTTCTCTTCCAGCCATCCATGATTGGGATGGAATCTCCTGGAATCCATGAAACCACATATAATTCGATCATGAAGTGTGATGTTGATATTAGGAAGGATCTATATGGTAACATTGTCTTGAGTGGTGGTTCCATTATGTTCCCAGGCATTGCTGACAGGATGAGCAAGGAGATTACAGCATTGGCACCGAGTAGCATAAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACATTGTTTGGATTGGGGACTCCATTTTGGCATCCCTTAGAACATTCCAACAGGTAAAAATAATGCATCACCATAGTTACATAGAGCAAATCATTAAATAA 543 0.4125 MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELDTAKTSSAVEKSYELPDGQVITIGAERFRCLEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSIMFPGIADRMSKEITALAPSSIKIKVVAPPERKYIVWIGDSILASLRTFQQVKIMHHHSYIEQIIK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1100 180 Pfam Actin 6 170 IPR004000 -
Ahy16g1100 180 PANTHER ACTIN-7 1 171 - -
Ahy16g1100 180 SUPERFAMILY Actin-like ATPase domain 1 168 IPR043129 -
Ahy16g1100 180 Gene3D Actin; Chain A, domain 4 1 82 - -
Ahy16g1100 180 SMART actin_3 1 174 IPR004000 -
Ahy16g1100 180 Gene3D - 150 170 - -
Ahy16g1100 180 Gene3D - 83 149 - -
Ahy16g1100 180 PANTHER ACTIN 1 171 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1100 Ahy-Chr16 19867428 19868071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1100 1 168 Cytoskeleton Gene Families AT5G09810 89.286 5.80e-108 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1100 K10355 - gmx:100807341 309.686