Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1086 ATGGCTCCCGATGCTTCCGACGCTCTCGCAGTGAGGCAGAAAGTTCAGCAATTTCTGAACGCTGCTCGCACCGGCAATCTTGATATCCTCAAGAATTTAGCGACTCAGCTGGACGAGTCCAAGGATTTGGCCAAGACCGTGGACTCAATTAAGGACGCAAACAAGCGAGGAGCCCTGCACTTCGCCGCCCGCGAAGGCCAGACCGAGATTTGCAAGTACTTGCTTGAGGAATTGAAGCTCCATGTCGATTCAAAAGACGATGATGGGGAAACTGCTCTCATTCATGCTGCTCGTCAGGGGCACACTGCCACTGCTAAATATCTCATTGACCGTGGTGCTAATCCCACCATAGCTAGCAATTTAGGGGCTACGGCCTTGCACCATTCTGCAGGGATAGGGGATACTGAGCTGCTCAAGTATTTGCTTTCTACAGGAATTAATCCTGATTTGGAAAGTGATGCCGGAACGCCTTTGGTTTGGGCTGCCGGTCATGGCCAACAAGCTGCTGTCAGTGTTCTACTAGAACATGGTGCAAATCCTAATGCTGAAACCGATGATGGTATTACCCCACTCCTTTCATCTGTGGCAGCCAGCTCGCTGGCATGCTTAGAGGAGTTAATTCAGGCCGGTGCGAAAGTAAATATTAGTGCTGGCGGAGCAACTCCTTTACACATTGCAGCTGATAATGGCAGTCTGGAAATTATAAATTGCTTATTGAAAGCTGGAGCTGATCCTAATGTGTCCGATGAGGATGGTGTTAAGCCAATACAAGTTGCAGCTGCAAGGGGCAATCGTGGAGCTGTTGAGATATTGTTCCCCTTGACATCCAAGATTGATGCCGTTCCTAATTGGACTGTTGATGGGATAATCGAGTATATGCAGTCTGAAATTAAGAAGCAACAGGATGAATCAACAACTAGCCGGCCGAAGGATACTACTGTGTCTCATCAGAAAAATGTCCCTGAGGTGGCACCTGAAGCCAAAAAGAGAGCAGCAGAAGCAAAAGCAAGAGGGGATGAGGCCTTTAGGAGGCAAGACTACAACATGGCTATAGATTCTTATACCCAAGCAATTGATCTGGACCCTAGTGAGGGTACTTTGCTATCCAATAGAAGTCTCTGTTGGATTAAGTTGGGTCAAGCTGAGCATGCTTTAGCCGATGCAAAGGCGTGCAGAATATTAAGACCGGATTGGCCGAAAGCCTGTTATAGGGAAGGAGCAGCTTTGAGAATTTTACAGAAGTTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAAAGCTTGATCCTGAGAATAAGGAGCTAGTAAATGCATTCAGGGAAGCTGTCGAAGCTGGGAGGAAGTTTCATGGTACAAAAGCTCAGAATAATTCATAA 1377 0.4706 MAPDASDALAVRQKVQQFLNAARTGNLDILKNLATQLDESKDLAKTVDSIKDANKRGALHFAAREGQTEICKYLLEELKLHVDSKDDDGETALIHAARQGHTATAKYLIDRGANPTIASNLGATALHHSAGIGDTELLKYLLSTGINPDLESDAGTPLVWAAGHGQQAAVSVLLEHGANPNAETDDGITPLLSSVAASSLACLEELIQAGAKVNISAGGATPLHIAADNGSLEIINCLLKAGADPNVSDEDGVKPIQVAAARGNRGAVEILFPLTSKIDAVPNWTVDGIIEYMQSEIKKQQDESTTSRPKDTTVSHQKNVPEVAPEAKKRAAEAKARGDEAFRRQDYNMAIDSYTQAIDLDPSEGTLLSNRSLCWIKLGQAEHALADAKACRILRPDWPKACYREGAALRILQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGTKAQNNS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Ahy16g1086 458 SUPERFAMILY Ankyrin repeat 19 273 IPR036770 -
Ahy16g1086 458 ProSiteProfiles TPR repeat profile. 331 364 IPR019734 GO:0005515
Ahy16g1086 458 Pfam Ankyrin repeats (3 copies) 196 273 IPR002110 GO:0005515
Ahy16g1086 458 Pfam Ankyrin repeats (3 copies) 122 182 IPR002110 GO:0005515
Ahy16g1086 458 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Ahy16g1086 458 PANTHER BNAC03G33870D PROTEIN 1 453 - -
Ahy16g1086 458 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Ahy16g1086 458 SMART tpr_5 365 398 IPR019734 GO:0005515
Ahy16g1086 458 SMART tpr_5 399 432 IPR019734 GO:0005515
Ahy16g1086 458 SMART tpr_5 331 364 IPR019734 GO:0005515
Ahy16g1086 458 MobiDBLite consensus disorder prediction 297 339 - -
Ahy16g1086 458 SUPERFAMILY TPR-like 330 442 IPR011990 GO:0005515
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Ahy16g1086 458 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 453 - -
Ahy16g1086 458 Pfam Tetratricopeptide repeat 400 432 IPR019734 GO:0005515
Ahy16g1086 458 Pfam Tetratricopeptide repeat 338 363 IPR019734 GO:0005515
Ahy16g1086 458 Gene3D - 89 153 IPR036770 -
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Ahy16g1086 458 SMART ANK_2a 54 84 IPR002110 GO:0005515
Ahy16g1086 458 SMART ANK_2a 218 247 IPR002110 GO:0005515
Ahy16g1086 458 SMART ANK_2a 153 182 IPR002110 GO:0005515
Ahy16g1086 458 SMART ANK_2a 88 117 IPR002110 GO:0005515
Ahy16g1086 458 SMART ANK_2a 186 215 IPR002110 GO:0005515
Ahy16g1086 458 SMART ANK_2a 251 280 IPR002110 GO:0005515
Ahy16g1086 458 SMART ANK_2a 121 150 IPR002110 GO:0005515
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Ahy16g1086 458 Gene3D Tetratricopeptide repeat domain 329 444 IPR011990 GO:0005515
Ahy16g1086 458 Gene3D - 8 88 IPR036770 -
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Ahy16g1086 458 PRINTS Ankyrin repeat signature 122 137 IPR002110 GO:0005515
Ahy16g1086 458 PRINTS Ankyrin repeat signature 169 183 IPR002110 GO:0005515
Ahy16g1086 458 MobiDBLite consensus disorder prediction 322 339 - -
Ahy16g1086 458 Gene3D - 154 316 IPR036770 -
Ahy16g1086 458 ProSiteProfiles Ankyrin repeat region circular profile. 153 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1086 Ahy-Chr16 19629903 19633782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1086 88 282 Ion Channels AT2G25600 30.846 9.90e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1086 - - gmx:100798118 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1086 16 19629903 19633782 Ahy16g1086 16 19629903 19633782 ECH
Ahy16g1086 16 19629903 19633782 Ahy6g0301 6 3765839 3769703 hybridization