Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1085 ATGGTTATGGCGAAGGTGAAGAGGCAGAAGCTGCAAGCATGCATCACGTGCCCACTCTGCCACAAACTCCTCCGAGACGCCACCACCATCTCCCTCTGCCTTCACACTTTTTGCAGGAAGTGCATATATAAGAAGCTTTCAGATGACGAGATGGATTGTTGTCCAGTATGTTATGTTGATCTCGGATGCCTTCCACTCCAAAAACTCAGGCCAGACCACAATTTGCAAGATATTAGGGCCAAAATATTCCCTTTTAGGCGAAGAAAAATCGATGCTCCCCAAGTTGTTCCTTCAATAACCTTGCCTGCAAAGAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAATGCTCCCAAGGTTTCAAATCAGACTGGCTTCACAGGCAAGAGAACAAAATCTGGCACAAGAAAGGCAGCTGAAGAAACATATGGTGAACATAATCTGGGTTCTTTTGTAGCTGATCCTTCTAAGAAGAGGCCCAATGAAGATACAGAAAACAGTATGGAACTTGCAGAAGGGAAGGGTGATCTCTGGACGCCCTTGAACTGTCTCGTTGAAGCTGCCAATCGAACAAAGTCCTCCAAATCAAACTCACAAGGGACTCCTCATGCCAAGTTAGAGTCTCCATCAACTGCTTATGGTGGACTAGACATGGTTGCAACCACAACCAAATCAGACCTACCTACTTCATTGAAGAGTGCATTTCACATGGTTAAAACTAAAATCAAGGATAATAGACATAAAAGGTTCGGAGCTGACAAGGAGGGACACACCCTGCATTCAGGATCTGCAGTGAAGCAAAAAAGGCCGCTGCGTCCTGTTCAGGAAAGAGCAGAAGCATCTGAGACATCTGCCTCAGATACAACAGGGAGCAGGTGTGATGGGAAAAACAGTCCTATTTGGTTTTCCTTAGTTGCTTCGGAAGACCAGAAGGGAGATGTTCCTTTGCCACAGATTTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCTGTCTCATTTATACAAAAGTATCTTGTGAAGAAACTTAATCTAACAAATGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGTTGCCAAATTTGCAGCTGCATAACTTAGTAGACTTGTGGTTCTGCTCAGGGTCAACTACAAAGAAGATGCCGGCATCTGTGGGCTCCTCGGCTAAGGACTTTGTCATGGTTTTATCATATTGTCGAAAGGTCGTACCTCATTGA 1227 0.4466 MVMAKVKRQKLQACITCPLCHKLLRDATTISLCLHTFCRKCIYKKLSDDEMDCCPVCYVDLGCLPLQKLRPDHNLQDIRAKIFPFRRRKIDAPQVVPSITLPAKRKERSLSSLVVNAPKVSNQTGFTGKRTKSGTRKAAEETYGEHNLGSFVADPSKKRPNEDTENSMELAEGKGDLWTPLNCLVEAANRTKSSKSNSQGTPHAKLESPSTAYGGLDMVATTTKSDLPTSLKSAFHMVKTKIKDNRHKRFGADKEGHTLHSGSAVKQKRPLRPVQERAEASETSASDTTGSRCDGKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLTNEAEVEIMCRGQPVLPNLQLHNLVDLWFCSGSTTKKMPASVGSSAKDFVMVLSYCRKVVPH* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1085 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 112 IPR013083 -
Ahy16g1085 408 MobiDBLite consensus disorder prediction 190 211 - -
Ahy16g1085 408 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Ahy16g1085 408 MobiDBLite consensus disorder prediction 190 206 - -
Ahy16g1085 408 ProSiteProfiles Zinc finger RING-type profile. 17 57 IPR001841 -
Ahy16g1085 408 MobiDBLite consensus disorder prediction 251 292 - -
Ahy16g1085 408 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Ahy16g1085 408 Gene3D - 281 385 - -
Ahy16g1085 408 MobiDBLite consensus disorder prediction 124 166 - -
Ahy16g1085 408 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 151 406 - -
Ahy16g1085 408 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 140 IPR044807 GO:0004842
Ahy16g1085 408 SMART ring_2 17 57 IPR001841 -
Ahy16g1085 408 SUPERFAMILY RING/U-box 11 81 - -
Ahy16g1085 408 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 151 406 IPR044807 GO:0004842
Ahy16g1085 408 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 3 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1085 Ahy-Chr16 19626471 19629760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1085 2 327 C3H Transcription Factor Family AT2G30580 41.389 7.50e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1085 K16277 - gmx:100783999 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1085 16 19626471 19629760 Ahy19g1752 19 81155945 81159575 ECH
Ahy16g1085 16 19626471 19629760 Ahy16g1085 16 19626471 19629760 ECH