Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1039 ATGGCGGACAAGGCCGTTACGATCCGAACCAGGAAATTCATGACGAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTCCTTCATCCAGGAAGGGCAAACGTTTCCAAGGCCGAGTTGAAGGAGAAGCTAGCAAGGATGTATGATGTGAAGGATCCAAACACTGTGTTTGTCTTCAAATTCCGTACAAATTTTGGTGGTGGCAAATCCACTGGCTTTGGTTTGATTTATGATTCTGTTGACAATGCAAAGAAGTATGAGCCCAAGTACAGGCTTATCAGGAATGGGCTTGATACTAAAGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGTGTCAAGAAGACCAAGGCTTCTGATGCTGCCAAGGCTGGAAAAAAGAAATGA 414 0.4396 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVFKFRTNFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1039 137 Gene3D - 1 132 - -
Ahy16g1039 137 MobiDBLite consensus disorder prediction 102 137 - -
Ahy16g1039 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ahy16g1039 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ahy16g1039 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Ahy16g1039 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ahy16g1039 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Ahy16g1039 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1039 Ahy-Chr16 18808119 18809844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1039 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 86.364 2.07e-83 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1039 K02974 - gmx:100499852 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1039 16 18808119 18809844 Ahy16g1039 16 18808119 18809844 ECH
Ahy16g1039 16 18808119 18809844 Ahy6g0336 6 4134932 4136765 hybridization
Ahy16g1039 16 18808119 18809844 Ahy19g1648 19 58613977 58615967 PCT
Ahy16g1039 16 18808119 18809844 Ahy9g1357 9 54953475 54955386 PCT
Ahy19g1648 19 58613977 58615967 Ahy16g1039 16 18808119 18809844 PCT
Ahy9g1357 9 54953475 54955386 Ahy16g1039 16 18808119 18809844 PCT