Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0979 ATGGATCATCAAGGGCATGGCCAAAACCCATCCATGGGGGTTGTCAGTAGTGGGGCTCAACTAACATATGGTTCCAATCCGTACCAGCCAAACCAAATGACTGGGGCACCAGGGTCAGTTGTTACATCGGTTGGGAACATGCAAAGCGGTCAACCTGCTGGAGCTCAACTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAACTACAGGCTTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGTCTCCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCGGCTGAGGCACCTGTCATATTTGCAAGGGCATGCGAAATGTTCATTTTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGAAGAACCCTTCAGAAAAATGATATTGCTGCTGCAATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCGATCCCAAGAGGAACAATGCCTGTTGCAGGGCCAGCTGATGCAATGCCTTACTGTTATATGCCGCCTCAACATGCACCCCAAGTTGGACCTGCAGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTACGCTCAGCAATCTCATCCCTACATGGCTCCACAAATGTGGCCGCAGCCACCAGACCAACGACAATCATCTCCGGATCATTAG 780 0.4667 MDHQGHGQNPSMGVVSSGAQLTYGSNPYQPNQMTGAPGSVVTSVGNMQSGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAMPYCYMPPQHAPQVGPAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPDH* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0979 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Ahy16g0979 259 Gene3D Histone, subunit A 62 178 IPR009072 GO:0046982
Ahy16g0979 259 SUPERFAMILY Histone-fold 69 172 IPR009072 GO:0046982
Ahy16g0979 259 MobiDBLite consensus disorder prediction 1 37 - -
Ahy16g0979 259 Pfam Core histone H2A/H2B/H3/H4 61 163 IPR007125 GO:0003677
Ahy16g0979 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
Ahy16g0979 259 MobiDBLite consensus disorder prediction 9 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0979 Ahy-Chr16 17635951 17638534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0979 1 246 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.158 2.31e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ahy16g0979 CBFD_NFYB_HMF 5.80E-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0979 K08066 - gmx:100527803 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0979 16 17635951 17638534 Ahy16g0979 16 17635951 17638534 ECH
Ahy16g0979 16 17635951 17638534 Ahy6g0388 6 4854805 4857372 hybridization
Ahy16g0979 16 17635951 17638534 Ahy19g1530 19 44089511 44092236 PCT
Ahy16g0979 16 17635951 17638534 Ahy9g1258 9 35397571 35400283 PCT
Ahy19g1530 19 44089511 44092236 Ahy16g0979 16 17635951 17638534 PCT
Ahy9g1258 9 35397571 35400283 Ahy16g0979 16 17635951 17638534 PCT