Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0959 ATGCGTTCTTCGTCTTTTGGAGATGAATTTTTCAAACGAACGAAAGAAGAAAATGACGGATTCGCAGTCCAATTCAGAGATTTTCAGTGTTCGGATTGTCTCCATCGACTATTACATGGCTCCGCCGATCCAAGGCGCCGATATCTGTTACAGCAGCTTCCACGGGGGAAAAGTGAAGGAGGTTCCTGTAATAAGAGTGTATGGTTCTACTCCTTCAGGCCAGAAGACTTGCTTGCACATTCACCGAGTGATGCATACACGAATAAGGTTGCTGCTTCTCTCGAGAAAGCCTTGCAGCTTAAAGGCAGTGCTGGTTCAACAAGGCAGCATGTGCATGGCTGCAGCCTTGTACGAGCAAGAAGATTCTATGGTTACCACTCGTTTGAGGAGTTATTTGTTAAGATATACCTATATTATCCGCAAGATGTCTCCCGTGCTGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGACAAATGTTTACAACCTCATGAATCACATATTCCCTATATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTAACAAAGATGAAATTTCGCCATCCTGTACCAGACTCTTCTCACAAGAAATCAAGTATTTATAGCGAGCACATAATGGCAGACTCAGGTGCTGATGTATGTTTGGAGTCAAAGATGTGGATATCTTCCACTGTCCCATCTGATTGGATGTGGTCACCTGCCGATGACTTTGGTGCTTCATCAAACAATAAGCCTTACTGCCCTAAAAGGCAAAGCACATCTGAGCTTGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCAGCAATTTATAATGTATTCATCTCTCTCACAAACATGCTCGGATGTGAAAATGGTTCAATCACTTGTACCTATATGGGAGGAACAGCAGAAAAGGACTGGAGTTAATGAGGCTACTATGCCTCCTGATCCTGGAAAACCACTTCCAGAAGATGTTATGAAGCTTCTTTCTGCTGGTATTGACTTTGAGAAAAGACTTATTGAATTGTGTAACATAGCTGGAACCACTGTGTCTTTAACTCCTTCTCAGAAAGAATTAAGAGAAACAGACATAATAGGCTCAGCATCACCACCATGTTCATTAAATGATGCCAAAATACACGAAGATGGGGGTGATAACAGCTTCAGTTTGTTGCCTGTGGACAAAATGCATTCATCTGAAATAATTGGATCGTCGGACATAAAGGCTGCAGAAAGGGAAGCCCAACATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATTAACTCTGATGATGAACTTGTTTGTGAAATGATGCTGAGTCCCCAGCTACCAGATGCAACGATTGATAAACTGCTGGAGAAAGTTAATATGCAATATGAGAGTGAGTCGCAAAAGGAATGTCAGGATATTCTAGATTCAGTTGATGATATGCTTGAGTTGAAGTTTTCTAAGCAAAAGCCTTCTTGTTCAATTGATCATGGTGATCCTATTGAAGTGTCAACTGAGAGTATAATACCCCAAGTTGATGGTTCAGCTGATGATGAATATTCAATTCCATGTGCTAGTTTGGCTGAAACCTCTTCTGCAGCAGAGAGAAATAGTGAATCCAGAAGGCTGTCTGAGTACCATGTCATGCACAGCACTGATACAGCCGTAGTTAGTAAAGATAAGAGGAGTAAGCAATGGGGGTCTTTGCCTTTTTCAGTGGCTGATAAGGTTAACTGCAAAGGAGAACAAGCTATAATGCAAGTGACTTGCCCATTTGAAAGTCAAAGTGGAGATTCTACTGATTCTGATAATGGGGTTAGAAAGAGTGCTCGTATTACAAGAAATGTGGGCAGAACTGTTTCAGAATCAAAACAACAGAGATTTGTTAACTGCTCTTTGCGGGACTTGATGAGGCGGAAGCGATCCTTTCGAGTTGAACAAACTGAATGCGATTCTGGGACAACTAAAAAGCTTGTTTTGGACAGGCATGAGGGATCAAATATCTGCCTTTGGAAAAAACGAATGGATTTGAGCACAATTCAAACCAACGAGGAAGAAACAAAACTCCTGAAAAATTGTGATCTTAAACTGAGCAATCATGATAATTTAGTGAGTCGGAAACTGCCACTTCCAGATGGTAAGGATAGTTTCTTACAGGATGATATGCAAAGCGATGAATGTTTTTCTGAAAATGAAATGGAGGCTCCAGAAGCAAGTGATCTGTTAAGGACTTCTGGAAATCAAGGTTCTTTAGTGTATATGCCAAATCCCTTTCCAGATGTTCAGTTAATGCGAACAGATACCGATTATAAAATCATAACTCCTGAGAGGTGTCAACAAACTTATTCTGCATCTTCAAGCAGTGTACAGAACTCATCCATTGATAATAAAGTGTCATGCAAGCCTAATTGCACGAATCAAGATTCTCATGGCAGCATATCTTTTGCACAAGAAAGCCAAATTCCAGCAATTTACACACGAGTGTTGCTTAATGAGAGAGTTGATAATAAAAAACATGGTGTAAATTTACTGGGTGAGAAGACTATTGTCTCAGAGTCTATTGATGATGACTTGAAGGATAAACACATGGAATTAACTGAAGTAAGTGCAGCTAAGGAAACCTGCTCAACTGACAAGAATCTTGAAAATCTTTTACCCTTGCCAACCATGCCTGATTCCCATTTACATTTGGATGAGGAAAGCTGTGATGAAATGTCAGGGAATGCTCTGGATGTTTTTCTTCCCATTTCCACAAAGGATTCCCAGAAAGAGATGAAGACTTGGAATAAATATGTTGCAATCAAAGCTCCTCGATCTCATGGGAAAAAGGATGTTGCTATCCACTATCAAAATGATGGCTCTCACGTATACGTGCTTACACCTAATATTTTGCCTCCGTCTGTAACCAGTGTGCAGAGATGGCTATCTCTAGATGAGAGAGATCACACAAGTCAAGAAACTGAAGTAGAGGCCAAGGATGTGCCTGAACACACTTCTGGACCTACTCTCCAGCCTAAGCTTTATGATGATAGTAGTGCAGAAAAGAAACCAGTCAAACCATCATGCATTAATGAAGGACAAACAGAAAGAGTGAAGGCAAGTGCAGATGGTTCACAGGATAATTCACAGATATCAGGCCCTATGAGGAAATCAAATTCTACCCCTCTGAGTCAAATTGGCTTTCGAGACCCTTCAAGTGTTGGATGTGGACAGCAATTGACATTACTCAGTATAGAGGTCCTTGCTGAATCAAGAGCAGACCTTTTACCTGACCCTCAGTTTGATGCTATCAACATTGTAGCTCTTGGTTTTCAGAATGATTGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAATAAATTTGAACCTTGTCAGAGAAGTTTTGATGGCTTAGTAGGCTGCAAAGTGTTGGTCTTTTCTGATGAAAAGCACTTGTTAAAGGAATTTATAAATATTGTCTCTTCATCTGACCCTGATATTTTGATGGGCTGGGATATTCAAGGGTATTCTCTTGGTTTCCTGGCAGAAAGGGCTTCACGATTTGGTTTAGGATTACTTAACAGTTTGTCACGAACTCCATCTGATTCATCGGTTGCTTCTGAAGATGTGAAAATTTCCGGAAAAGGTATCTTGGAATTTGACGATCCTGATACTCCTAGTATAGATTGTTGTGTACAAGGAAGTTCAATAATTGAGGATGAATGGGGACGGACACATGCAAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGGCTGATCCGCGGAGAAGTTAAGCTGAACTTATATTCGATTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCATTCTTTCACAACAAGGTGCTGACAAGATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTGTAGAAAGAACAAAGCTGAACCTTGAGATCTTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTATCACGTGGTTCACAATATCGGGTTGAATCCATGTTATTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCTCTAGTGATGGAACCCGAGTCAGGATTTTATTCTGATCCTGTTGTTGTATTTGACTTTCAATCTTTATATCCATCTATGATAATTGCATACAACCTTTGCTTTTGTACGTGTCTTGGCAAAGTTGTAGCTTCGAAGGCTAACACGCTTGGGGTCAGTTCATTTTCGCCAGAGCAACATGTTCTTCAGTATTTGAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGCAGAGGTGTGCTTCCCCGCTTATTGGAAGAGATCTTGTCAACCAGAATAATGGTGAAACAAGCAATTAAAAAGTTGGCTCCCTCAGAGCAAGTGCTTCAGCGGATATTTAATGCAAGGCAGCTGGCATTGAAACTCATATCCAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAGAGGGCGATCTCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTATTTACGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAATCTTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCTGTTACCCTGAAGATGGAGAAAGTTTATCAACCTTGTTTCCTCCTGACAAAGAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGAACAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAATCCGCAGGGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGATTATTTTTTCAGCATCAGGATTTATTGGAGGTCAAATGTTACTTGCAACGTCAGTGGAAGAGGATACTTTCTGGAAGATTCTCCCTGAAAGATTTCGTCTTTGCAAAGGAGGTTCGTCTGGGTACCTACAGTGGAAGGATCTCTTCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGATCTGATCGTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCACGGTGAGCCTGGAGCCCGCCTGTCTGATATGGTTGTGGATCCATTGGAAGTCTTGGCAATTGATTCTCCATTTAGAATAAATGATTTATATTACATTAACAAGCAAATAATACCAGCCTTGCAGCGTGTCTTTAGCCTTGTTGGCGCTGACCTGATCCAGTGGTTTTTAGAGATGCCCCGCCCCGTAAGGGAAGCATCTGTAAAGAATAAGTTCTCTTCAAATTTTCAGAGAACCAGAATTGATTATTACTATCTCTCGAAACATTGTATAGTATGTGGGCAGTTGGTCCAGGCTTCAGCACGTTTGTGTAGTCAATGCTCCAAAAATGAAGCAGCTGCTGCAACAGCAGTGATTAGTAAAACTTCTAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGCGGCGGTGATAGGCTTCTCGAAAGTGGGGTGAAGTGCACGTCCATTGCATGCACGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAATTATTAGCTGCCACTGATGTCGCTGCAGAGAAAGGCTTCTATCCGAAATGCACGGTAGAATGGTTCTAA 5796 0.4136 MRSSSFGDEFFKRTKEENDGFAVQFRDFQCSDCLHRLLHGSADPRRRYLLQQLPRGKSEGGSCNKSVWFYSFRPEDLLAHSPSDAYTNKVAASLEKALQLKGSAGSTRQHVHGCSLVRARRFYGYHSFEELFVKIYLYYPQDVSRAANLLLAGAVLDKCLQPHESHIPYILQFLVDYNLYGMGHLHLTKMKFRHPVPDSSHKKSSIYSEHIMADSGADVCLESKMWISSTVPSDWMWSPADDFGASSNNKPYCPKRQSTSELEGDASVDEILNQQFIMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGVNEATMPPDPGKPLPEDVMKLLSAGIDFEKRLIELCNIAGTTVSLTPSQKELRETDIIGSASPPCSLNDAKIHEDGGDNSFSLLPVDKMHSSEIIGSSDIKAAEREAQHLLKWLATSQAAEDINSDDELVCEMMLSPQLPDATIDKLLEKVNMQYESESQKECQDILDSVDDMLELKFSKQKPSCSIDHGDPIEVSTESIIPQVDGSADDEYSIPCASLAETSSAAERNSESRRLSEYHVMHSTDTAVVSKDKRSKQWGSLPFSVADKVNCKGEQAIMQVTCPFESQSGDSTDSDNGVRKSARITRNVGRTVSESKQQRFVNCSLRDLMRRKRSFRVEQTECDSGTTKKLVLDRHEGSNICLWKKRMDLSTIQTNEEETKLLKNCDLKLSNHDNLVSRKLPLPDGKDSFLQDDMQSDECFSENEMEAPEASDLLRTSGNQGSLVYMPNPFPDVQLMRTDTDYKIITPERCQQTYSASSSSVQNSSIDNKVSCKPNCTNQDSHGSISFAQESQIPAIYTRVLLNERVDNKKHGVNLLGEKTIVSESIDDDLKDKHMELTEVSAAKETCSTDKNLENLLPLPTMPDSHLHLDEESCDEMSGNALDVFLPISTKDSQKEMKTWNKYVAIKAPRSHGKKDVAIHYQNDGSHVYVLTPNILPPSVTSVQRWLSLDERDHTSQETEVEAKDVPEHTSGPTLQPKLYDDSSAEKKPVKPSCINEGQTERVKASADGSQDNSQISGPMRKSNSTPLSQIGFRDPSSVGCGQQLTLLSIEVLAESRADLLPDPQFDAINIVALGFQNDCDSIIEVLVLLHNKFEPCQRSFDGLVGCKVLVFSDEKHLLKEFINIVSSSDPDILMGWDIQGYSLGFLAERASRFGLGLLNSLSRTPSDSSVASEDVKISGKGILEFDDPDTPSIDCCVQGSSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSIEAVAEAVLRRKIPFFHNKVLTRWFSSGPGRARYRCIKYVVERTKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQYLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLERAISFVNLHEKWNARVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYQPCFLLTKKRYVGYSYESPEQIEPVFDAKGIETIRRDTCGAVAKIMEQSLRLFFQHQDLLEVKCYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSGRISSLPPAAIVATKAMRSDRRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFSLVGADLIQWFLEMPRPVREASVKNKFSSNFQRTRIDYYYLSKHCIVCGQLVQASARLCSQCSKNEAAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSIACTVFYERRKVQKELLAATDVAAEKGFYPKCTVEWF* 1932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0959 1931 CDD DNA_polB_zeta_exo 1069 1319 - -
Ahy16g0959 1931 MobiDBLite consensus disorder prediction 979 994 - -
Ahy16g0959 1931 MobiDBLite consensus disorder prediction 1026 1062 - -
Ahy16g0959 1931 ProSitePatterns DNA polymerase family B signature. 1564 1572 IPR017964 GO:0000166|GO:0003676
Ahy16g0959 1931 MobiDBLite consensus disorder prediction 979 1062 - -
Ahy16g0959 1931 Pfam DNA polymerase family B, exonuclease domain 1130 1193 IPR006133 -
Ahy16g0959 1931 Gene3D Palm domain of DNA polymerase 1383 1628 IPR023211 -
Ahy16g0959 1931 Gene3D DNA Polymerase, chain B, domain 1 68 194 - -
Ahy16g0959 1931 SMART polmehr3 1070 1576 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy16g0959 1931 PRINTS DNA-directed DNA-polymerase family B signature 1562 1570 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy16g0959 1931 PRINTS DNA-directed DNA-polymerase family B signature 1397 1410 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy16g0959 1931 PRINTS DNA-directed DNA-polymerase family B signature 1506 1518 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy16g0959 1931 Gene3D - 1102 1380 IPR036397 GO:0003676
Ahy16g0959 1931 SUPERFAMILY DNA/RNA polymerases 1384 1796 IPR043502 -
Ahy16g0959 1931 CDD POLBc_zeta 1345 1792 - -
Ahy16g0959 1931 Gene3D - 1639 1800 IPR042087 -
Ahy16g0959 1931 Pfam DNA polymerase family B 1338 1786 IPR006134 GO:0000166|GO:0003677
Ahy16g0959 1931 SUPERFAMILY Ribonuclease H-like 110 1359 IPR012337 -
Ahy16g0959 1931 Pfam C4-type zinc-finger of DNA polymerase delta 1830 1903 IPR025687 -
Ahy16g0959 1931 Gene3D Helix hairpin bin 1463 1523 - -
Ahy16g0959 1931 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 80 1924 IPR030559 GO:0006281|GO:0016035|GO:0019985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0959 Ahy-Chr16 17241195 17253904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0959 1108 1913 Core DNA Replication Machinery Family AT5G63960 28.775 7.13e-88 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0959 K02350 - gmx:100777934 2650.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0959 16 17241195 17253904 Ahy16g0959 16 17241195 17253904 ECH
Ahy16g0959 16 17241195 17253904 Ahy6g0404 6 5001976 5014824 hybridization