Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0933 ATGGGTCTCGGCACCGACAACGACAACAATGACGACGGAGTCACCAACCCTTCTCCCTCCGTCTCTTGCTCTATTTGTCTCGAGCCCGTTGCCCGCAGCGGCGATAGATCCTGGGCCAACCTTCAATGCGGCCATCAATTTCACCTCGATTGCATTGGCTCAGCCTTCAATATAAAAGGGGCAATGCAATGCCCTAATTGCCGGAAGATTGAGAAAGGCCAGTGGCTTTATGGTTCCCGGTCATATCCGGAGTTCAGCTCAGACGATTGGACACATGATGAGGATCTATACGATCTTAGCTACTCTGAAATGTCCTTTGGAGTTCACTGGTGCCCTTTTGGTAACTTGACCCGACTTCCTTCTGCCTTCGAAGAAGGGGAATTTTCATCAACTGCATATCCTGATATACTCGGACACCATGCTATATTTGCGGAACATACAGCAGTGTCATCTGGTAGTCATCCTTGTCCGTATATAGCTTATTTTGGACCTATACATCCCTCCACCTCCAACTCTGGCGGAAATGGCTCGGAAGCATCTAACTTCAACCACTGGAGTGGCCCTCCTATACCTAGCGACTTGCCAACCTCCTATGCGTTTCCAGCCTTGGATCTCCATTATCCCAGTTGGGAACACCATTCATCTCATTTTTCTTCTGCGAACAGCCGTCTAGGCACTGCAGATCAGCCCTCAGTATCGCCTGGTAGTCAAAGGCCAGGCAGGGGTAGTTTGGAGATCCCAAGATCGGGATCTTTTATGCATCCCTTCATTGTTGGTCACAGTTCTGGTGCTAGAGCTGGGGCATCAGTTGCATCTTCAATGATACCTCCATATCCAGGTAGCAATGCCCGGGCCCGAGACAGAGTCCAGGCTCTTCAGGCATACTATCAACCTCCACAACCTCCTAATTCTACCTCAATGCGGACTCCTAATGCCTCTGACACTAGAAGGTCCAGCAGCCATAATGGGTCAGCTCAATTAGCACAAGTGGCCTCATCACCAGACCAAAGCGGTGGCTTCTTATTGATTCCATCAGGTTCATCGGGACGCAATTTTCCGGAAGAAGCCCATCTGCCAAGTCGCTTCCAAGCTTGGGAAAGAGATCACTTGCCTTCATTATCATTCAATCATGTGGATAGAGAATCAAGTTGGAGAGCATACCACCAGGCTGCCAGTGGATCAGAGCCAAGTTTCAGGTCCAGCAGCTTTCAGTTGAGGCACGGATCAGAAAGAATGCCTTCACAAAATCGATGA 1254 0.496 MGLGTDNDNNDDGVTNPSPSVSCSICLEPVARSGDRSWANLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYGSRSYPEFSSDDWTHDEDLYDLSYSEMSFGVHWCPFGNLTRLPSAFEEGEFSSTAYPDILGHHAIFAEHTAVSSGSHPCPYIAYFGPIHPSTSNSGGNGSEASNFNHWSGPPIPSDLPTSYAFPALDLHYPSWEHHSSHFSSANSRLGTADQPSVSPGSQRPGRGSLEIPRSGSFMHPFIVGHSSGARAGASVASSMIPPYPGSNARARDRVQALQAYYQPPQPPNSTSMRTPNASDTRRSSSHNGSAQLAQVASSPDQSGGFLLIPSGSSGRNFPEEAHLPSRFQAWERDHLPSLSFNHVDRESSWRAYHQAASGSEPSFRSSSFQLRHGSERMPSQNR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0933 417 MobiDBLite consensus disorder prediction 217 248 - -
Ahy16g0933 417 CDD RING-H2 23 68 - -
Ahy16g0933 417 MobiDBLite consensus disorder prediction 217 238 - -
Ahy16g0933 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 77 IPR013083 -
Ahy16g0933 417 Pfam Ring finger domain 22 68 IPR001841 -
Ahy16g0933 417 SUPERFAMILY RING/U-box 21 70 - -
Ahy16g0933 417 MobiDBLite consensus disorder prediction 388 417 - -
Ahy16g0933 417 PANTHER OS09G0511500 PROTEIN 1 417 IPR044274 GO:0004842
Ahy16g0933 417 MobiDBLite consensus disorder prediction 296 354 - -
Ahy16g0933 417 ProSiteProfiles Zinc finger RING-type profile. 23 68 IPR001841 -
Ahy16g0933 417 PANTHER PROTEIN, PUTATIVE-RELATED 1 417 - -
Ahy16g0933 417 SMART ring_2 23 67 IPR001841 -
Ahy16g0933 417 MobiDBLite consensus disorder prediction 296 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0933 Ahy-Chr16 16763046 16767468 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0933 - - ahf:112758092 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0933 16 16763046 16767468 Ahy6g0430 6 5288403 5293084 hybridization
Ahy16g0933 16 16763046 16767468 Ahy19g1463 19 38068506 38078857 PCT
Ahy16g0933 16 16763046 16767468 Ahy9g1183 9 30513435 30523177 PCT