Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0931 ATGAGTCGAGGGGGTGCAGTTGGAGCTAAGGGAAAAAAGAAGGGTGCAACATTCACCATTGACTGCACAAAACCAGTGGAGGACAAGATTATGGACATTGCTTCTCTTGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGCAAAGCTGGTGCTCTTGGTGATTCTGTCACTGTCTCCCGTGAGAAGAACAAGATCACTGTCACCTCTGACAGTAACTTCTCCAAGCGGTACTTGAAGTATTTGACAAAGAAGTACTTGAAGAAACACAATGTGCGTGATTGGCTCAGGGTGATTGCTTCTAACAAAGATAGGAATGTCTATGAACTGAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTAA 375 0.4373 MSRGGAVGAKGKKKGATFTIDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0931 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Ahy16g0931 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Ahy16g0931 124 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 124 - -
Ahy16g0931 124 Gene3D - 6 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0931 Ahy-Chr16 16704082 16705576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0931 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 7.60e-69 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0931 K02891 - pop:7481725 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0931 16 16704082 16705576 Ahy16g0931 16 16704082 16705576 ECH
Ahy16g0931 16 16704082 16705576 Ahy6g0431 6 5295153 5296624 hybridization