Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0927 ATGGGGATCGATATTAAGGCTGGCGGCAAGAGCAAAAAGACCAAAAGGACCGCACCCAAGTCCAATGATATCTACCTCAAGCTCCTCGTCAAGCTTTACCGCTTCCTAGTGAGGAGGACCGGCAGCAATTTCAATGCCGTGATACTGAAGCGCTTGTTCATGAGCAAGGTTAACAAGCCTCCGCTTTCTTTGTCACGCTTGATTAAGTTCATGAAGGGCAAGGAAGGTAAAATTGCCGTTGTAGTGGGAACTGTAACCGATGATATCAGAGTGTATGAAGTTCCTGCATTGAAGGTTACTGCACTCAGGTTTACAGAGACTGCACGTGCTAGAATAGAGAAGGCTGGTGGTGAATGCTTGACATTTGATCAGCTTGCACTTAGGGCTCCTCTCGGACAGAACACGGTCCTTCTTAGAGGCCCAAAGAACTCCAGGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTTCCTCACAGCCATACCAAGCCTTATGTACGATCTAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAGGAGGAACAGCAAAGGATTTAGGGTTTAA 564 0.4787 MGIDIKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKFMKGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSKGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0927 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Ahy16g0927 187 MobiDBLite consensus disorder prediction 151 187 - -
Ahy16g0927 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Ahy16g0927 187 Gene3D - 1 187 - -
Ahy16g0927 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
Ahy16g0927 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Ahy16g0927 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0927 Ahy-Chr16 16635925 16637630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0927 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.032 1.03e-105 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0927 K02883 - csv:101209626 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0927 16 16635925 16637630 Ahy6g0435 6 5329893 5331610 hybridization
Ahy16g0927 16 16635925 16637630 Ahy19g1448 19 37208570 37210910 PCT
Ahy16g0927 16 16635925 16637630 Ahy9g1170 9 29895504 29897917 PCT