Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0920 ATGGCAGGGGGAGACCCAGAGAGGAATAAAAGACTAGTCCTTATAGGAGTCTCAACCTTCTTATTGGTGGCCATGGTGGTGGCCGTCACACTCAGCGTCACCTTGAACAAGAACTCCAGTGATGGTTCAAAGGCAGAAGACCAGAGCCATGTTGCATCGTCGGTGAAAGCGGTGAAGACCCTCTGCGCTCCTACAGATTACAGAGAGGAATGCGAGCAGTCATTGTCCGCAGAAGCCGGCAACACCACGGATCCAAGGGAACTCATCAAGATCGCATTCAACATCACCATCAAGAGGATCACCGATGGCCTTGAGCAGACCCAGATGCTTCAGGAATTGGAGAACGACCCCATGGCCAAGCAGGCTCTCGACTCTTGCAAGCAACTCATGGACCTCTCCATTGACGAGTTCAACAGGTCCCTCGAGAAGCTTGGAAGGTTCGACCTCAACAACATCGACAACATTCTCAGCAGCTTGAAGGTCTGGCTCAGCGGTGCCATCACCTACCAGGAGACCTGCCTTGACGGCTTCGAGAACACCACCAGCAGCGCCGGCGAGCAGATGAAGGAATTGTTGAGGACCGCCATGCACATGAGCAGCAATGGCCTCGCCATCATCACCGAGCTCGACAAGACCATGAGCGCCATGCATTTCCCCTCCACCCAGCCCGCCGGAGCCCGCCGCCTGATGTCCGAGGACGATGAGGACCAGGACCAGGACCAGGAGCTCCCCGAGTGGATCGAGGACCGCATCGCCGTCCGCAAGCTTATGGCTACTGTTGGTGGCGGAAGAAGGTTCAAGGCTGACGTGACAGTTGCAAAGGATGGTTCTGGTGATTTCCAGACCATCACAGAAGCCTTGAGGAAGGTTCCTTCAAATAACAAGAAGCCCTTCATCATCCACATCAAGGAGGGTGTCTACCAGGAGTACCTTGAAGTCCCCAGGAACTTGACCCACGTTGTCTTCATCGGCGATGGTGGTCACAAGACCCGCATCACCGGCAATAAGAACTTCATCGATGGCGTTAACACTTACAAGACCGCCACCGTTGCTGTTCAAGGAGACTACTTCGTTGCCATGGGAGTAGGATTCGAGAACTCAGCCGGAGCAGCGAAGCACCAGGCAGTGGCTCTGAGGGTGCAAGCAGACAAATCCATCTTCTACAAGTGCAGAATGGACGGTTACCAAGACACACTGTACGCCCACACCATGCGTCAGTTCTACAGAGACTGCGTGATCTCAGGCACCATCGATTTCGTGTTCGGAGATGCAGTGTCAGTCTTCCAGAACTGCACCTTCGAGGTGAGGAAGCCATTGGCAAACCAGCAGTGCATTGTGACAGCACAAGGCAGGAAGGAGAGGTACCAGCCAACAGGAATTGTGATCCAGGGTGGTTCCATCGTGTCAGACCCAGAATACTTCCCAGTTAGGTTCACCAACAAGGCCTTCCTTGCTCGTCCATGGAAGAATTACTCAAGGACCGTCTTCTTGGATACCTACCTTGATGACTTGGTCACCCCCGCCGGTTACATGCCATGGCAAACAGCCGAGGGACTCTCCGGCATGGACACTTGCTACTACGCTGAGTTCGGCAACCGTGGTCCCGGAGCTGACAACACCAACCGTGTCAACTGGCTTGGTATCAAGAAAAACTTCACAGCACAAGCAGCAAACATGTACAATCCAACCAACTTCTTCCGTGGAGATGAATGGATCAAGGTTACCAAGATTCCCTACAACCCTGGCCAACCCGCTCCCGCCAGTAACAGTAATTTTGCCGCCGCCTTGTTACGCCGTGTTGCAGCTGCCCCTAGAACCAGCCCCTCCTCCTCCTCCCCTGCTCCTGCTTCTTCTCCGACCGCGGCCGCCACAACCACTGCCACCTCCTCCCCTGCTCCTTCCCCTTCTAATCTCTAA 1917 0.5451 MAGGDPERNKRLVLIGVSTFLLVAMVVAVTLSVTLNKNSSDGSKAEDQSHVASSVKAVKTLCAPTDYREECEQSLSAEAGNTTDPRELIKIAFNITIKRITDGLEQTQMLQELENDPMAKQALDSCKQLMDLSIDEFNRSLEKLGRFDLNNIDNILSSLKVWLSGAITYQETCLDGFENTTSSAGEQMKELLRTAMHMSSNGLAIITELDKTMSAMHFPSTQPAGARRLMSEDDEDQDQDQELPEWIEDRIAVRKLMATVGGGRRFKADVTVAKDGSGDFQTITEALRKVPSNNKKPFIIHIKEGVYQEYLEVPRNLTHVVFIGDGGHKTRITGNKNFIDGVNTYKTATVAVQGDYFVAMGVGFENSAGAAKHQAVALRVQADKSIFYKCRMDGYQDTLYAHTMRQFYRDCVISGTIDFVFGDAVSVFQNCTFEVRKPLANQQCIVTAQGRKERYQPTGIVIQGGSIVSDPEYFPVRFTNKAFLARPWKNYSRTVFLDTYLDDLVTPAGYMPWQTAEGLSGMDTCYYAEFGNRGPGADNTNRVNWLGIKKNFTAQAANMYNPTNFFRGDEWIKVTKIPYNPGQPAPASNSNFAAALLRRVAAAPRTSPSSSSPAPASSPTAAATTTATSSPAPSPSNL* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0920 638 Pfam Pectinesterase 269 569 IPR000070 GO:0030599|GO:0042545
Ahy16g0920 638 MobiDBLite consensus disorder prediction 604 638 - -
Ahy16g0920 638 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 209 IPR006501 GO:0004857
Ahy16g0920 638 PANTHER PECTINESTERASE 12 585 - -
Ahy16g0920 638 PANTHER PECTINESTERASE 12 585 - -
Ahy16g0920 638 CDD PMEI-like_3 60 211 - -
Ahy16g0920 638 MobiDBLite consensus disorder prediction 603 638 - -
Ahy16g0920 638 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Ahy16g0920 638 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Ahy16g0920 638 Gene3D - 263 583 IPR012334 -
Ahy16g0920 638 SUPERFAMILY Pectin lyase-like 266 581 IPR011050 -
Ahy16g0920 638 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Ahy16g0920 638 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 211 IPR035513 -
Ahy16g0920 638 SMART PMEI_2 53 205 IPR006501 GO:0004857
Ahy16g0920 638 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Ahy16g0920 638 MobiDBLite consensus disorder prediction 221 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0920 Ahy-Chr16 16499916 16502367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0920 5 635 Carbohydrate Esterase AT3G05610 47.087 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0920 K01051 - gmx:100801686 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0920 16 16499916 16502367 Ahy19g1248 19 24593938 24596008 ECH
Ahy16g0920 16 16499916 16502367 Ahy16g0920 16 16499916 16502367 ECH
Ahy16g0920 16 16499916 16502367 Ahy6g0444 6 5412248 5414708 hybridization
Ahy16g0920 16 16499916 16502367 Ahy19g1446 19 37173661 37176613 PCT
Ahy16g0920 16 16499916 16502367 Ahy9g1168 9 29846334 29850864 PCT