Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0879 ATGTCTCTGCGACCGAGTGCCAACTCTCGCTCGGAGACGAGGAAGAAGTCCTACAAGATCGGCGTCGACGCCGACGAGGCTCGTCGCCGGAGGGAGGACAACCTGGTCGAGATCAGGAAGAACAAGCGCGAGGACAGTCTTCTAAAGAAACGAAGGGAGGGCCTTCTCCTTCACCCTCATTTGCCCAGTAACAACAATAACCATGCCCCTTCTCCTTCCTTCCCCGCCAACCGGTTAGAAGGCATTCCTGTGATGGTACAACGAGTATGGTCCGATGACCCAGCTGCACAATTAGAAGCAACTACTCAGTTTAGAAAGCTATTATCAATTGAACGCAGCCCTCCAATTGATGAGGTCATTAAGGCAGGTGTTGTCCCTAGGTTTGTGGAGTTTTTGGGAAGGCATGATCTACCACAGTTGCAAGCAGTATGGGCCTTGGGTAATGTTGCTGGTGACTCCCCAAACTGTAGGGATCTTGTTCTAAGTCATGGTGCACTCATGCCATTACTGTCTCAATTGAATCAACATTCTAAACCATCTATGTTGAGGAATGCTACATGGACTTTGTCTAATTTCTGCCGTGGAAAGCCTCCAACACCCTTTGAACAGGTAAAGCCTGCCTTGCCTGTTCTTCGGGAGCTCATTTACTTGAATGATGAAGAAGTTCTAACAGATGCGTGCTGGGCTCTATCTTACCTTTCAGATGGCCCAAATGAAAAAATTCAAGCTGTAATTGAAATAGGAGTATGCCCAAGACTTGTGGAGCTCTTGCTACATCCATCACCTACAGTTCTTATACCTGCTCTTCGAACTGTAGGAAATATTGTTACCGGTGACGATGCTCAGACTCAGTTTGTAATTGATAAAGGAGTTCTCCCCTGTCTTCACCAACTTCTTTCGCAAAATAACAAGAAAAACATCAGGAAAGAAGCTTGTTGGACGATATCAAATATCACAGCTGGGAATAGAATTCAAATACAGGCTGTCATTGAGGCCAACGTTATTCCTCCTCTTGTCAATCTTCTTCAGAATGCAGAATTTGAAATCAAGAAGGAAGCTGCATGGGCTATTTCCAATGCAACTTCTGGAGGATCTCATGAGCAGATTCAGTTCCTGGCAAGTCAAGGTTGCATCAAGCCATTGTGTGATCTATTGACATGTCCCGACCCAAGGATTGTGACAGTTTGTCTTGAGGGGCTGGATAACATTTTAAAGGTTGGAGAAGCTGACAAGGAAATGGGACACAACGGCGGGATCAATATTTTCGCTCAAATGGTTGACGAATGTGAAGGATTGGATAAGATCGAAAATCTGCAGACCCATGACAACAATGAGATTTATGAGAGGGCTGTGAAGATTTTGGAGAGATATTGGGCTGAGGATGAATTGGAAGTTGAGCAGAGTCAGAATGGCGGGGATGGTACTCAGCAAGGTTTTTCTTTTGGGACTAACCATCCCACCCTCCCGCCAGGTGGTTTTAACTTCGGGTGA 1491 0.4594 MSLRPSANSRSETRKKSYKIGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLLLHPHLPSNNNNHAPSPSFPANRLEGIPVMVQRVWSDDPAAQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDLPQLQAVWALGNVAGDSPNCRDLVLSHGALMPLLSQLNQHSKPSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLRELIYLNDEEVLTDACWALSYLSDGPNEKIQAVIEIGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFVIDKGVLPCLHQLLSQNNKKNIRKEACWTISNITAGNRIQIQAVIEANVIPPLVNLLQNAEFEIKKEAAWAISNATSGGSHEQIQFLASQGCIKPLCDLLTCPDPRIVTVCLEGLDNILKVGEADKEMGHNGGINIFAQMVDECEGLDKIENLQTHDNNEIYERAVKILERYWAEDELEVEQSQNGGDGTQQGFSFGTNHPTLPPGGFNFG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0879 496 SMART arm_5 279 320 IPR000225 GO:0005515
Ahy16g0879 496 SMART arm_5 365 405 IPR000225 GO:0005515
Ahy16g0879 496 SMART arm_5 152 194 IPR000225 GO:0005515
Ahy16g0879 496 SMART arm_5 322 362 IPR000225 GO:0005515
Ahy16g0879 496 SMART arm_5 237 277 IPR000225 GO:0005515
Ahy16g0879 496 SMART arm_5 112 151 IPR000225 GO:0005515
Ahy16g0879 496 SMART arm_5 196 235 IPR000225 GO:0005515
Ahy16g0879 496 PIRSF Importin_alpha 5 141 IPR024931 GO:0005737|GO:0006606|GO:0061608
Ahy16g0879 496 PIRSF Importin_alpha 138 495 IPR024931 GO:0005737|GO:0006606|GO:0061608
Ahy16g0879 496 Pfam Atypical Arm repeat 420 464 IPR032413 -
Ahy16g0879 496 PANTHER IMPORTIN SUBUNIT ALPHA 10 141 - -
Ahy16g0879 496 PANTHER IMPORTIN SUBUNIT ALPHA 141 484 - -
Ahy16g0879 496 MobiDBLite consensus disorder prediction 464 496 - -
Ahy16g0879 496 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 361 IPR000225 GO:0005515
Ahy16g0879 496 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 322 IPR000225 GO:0005515
Ahy16g0879 496 MobiDBLite consensus disorder prediction 9 32 - -
Ahy16g0879 496 Gene3D - 13 52 IPR036975 GO:0006606
Ahy16g0879 496 SUPERFAMILY ARM repeat 14 460 IPR016024 -
Ahy16g0879 496 MobiDBLite consensus disorder prediction 468 484 - -
Ahy16g0879 496 Pfam Importin beta binding domain 14 102 IPR002652 GO:0006606|GO:0061608
Ahy16g0879 496 MobiDBLite consensus disorder prediction 1 32 - -
Ahy16g0879 496 PANTHER IMPORTIN ALPHA 10 141 - -
Ahy16g0879 496 PANTHER IMPORTIN ALPHA 141 484 - -
Ahy16g0879 496 Gene3D - 81 459 IPR011989 -
Ahy16g0879 496 Pfam Armadillo/beta-catenin-like repeat 207 234 IPR000225 GO:0005515
Ahy16g0879 496 Pfam Armadillo/beta-catenin-like repeat 279 320 IPR000225 GO:0005515
Ahy16g0879 496 Pfam Armadillo/beta-catenin-like repeat 366 403 IPR000225 GO:0005515
Ahy16g0879 496 Pfam Armadillo/beta-catenin-like repeat 113 150 IPR000225 GO:0005515
Ahy16g0879 496 Pfam Armadillo/beta-catenin-like repeat 325 361 IPR000225 GO:0005515
Ahy16g0879 496 Pfam Armadillo/beta-catenin-like repeat 153 194 IPR000225 GO:0005515
Ahy16g0879 496 Pfam Armadillo/beta-catenin-like repeat 238 276 IPR000225 GO:0005515
Ahy16g0879 496 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0879 Ahy-Chr16 15728764 15733788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0879 248 427 U-box Gene Family AT2G23140 24.725 1.59e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0879 K15042 - vvi:100263083 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0879 16 15728764 15733788 Ahy16g0879 16 15728764 15733788 ECH
Ahy16g0879 16 15728764 15733788 Ahy6g0481 6 5892262 5897299 hybridization