LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g0832	ATGGTGCAAATGGGGTTCCAATATTTGGGCACAAGAGGCATGAGAAGTGGGTATGAGAGGCTTGGAAAACAACGTTGTTGGGTGAAATCTGTGAATGGAAGATTACGAGGTATTAGGTTGTCACGGTTAAAGAGGCTTTCCCTGAAGGCTTTCACCATCAGCAAGATCATGAGAATGTACAATGATGTTGTCAACAGAATGAACCTGCAGGAAGTGTTTGGTAATGCTGCTGTTGTTATTCCCACACAATGGGGTCTTCCTGTAATCTCTCATCATCATCATCATCCATCAGTTCTTAGTAGATCTTGGTCGTGGCTCGTCCAAAAAAGAAATCTTGGTCGTGGCTTTGGCGGTGGTAGTAGCCTCTTTGCTCGACGTACTCTTCCTTTAGCCGTTCCTCGCTCTGCCATACACCCACCGCCCACCACCACCATAATCATCAACAACCGCCTTAAAACGCAATCCTCTCTTCTTCACGCGCACACACAGATCTATTATACTTATGAATGGCGTGGCTGGAGCTTGGAAAGAAGGCGTGTGGCAGGGTCAAGCAGTGGACCTATTTATACTGCACAATCTGTTTATGCATCAGCAAGATGCATGCCAGACCTCATCAGCCACACATCTGTGGGAGTGGCTAGTTTTTTCAGTGGGACTAAAGGTGATATACGGTGCTTCCATGCTAGTCCGGAAGTTTGGGCAAGAAGAGGTGATGAGGCATTTGGGTTGAAGGCCCCAAAGAAGGAGAAGTATGTAAGAAAGGAAGGTAGGAACCAGCCACCTGTTGAAGCTCGATATGTCCCTCGTAATGTCAAAGCACCCAAATCTAATCCTGATAAAACAGTAGAAGTATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAACCTCTCAGCATGGATACTGCAGAGCTTGCTGCAATGGAAGTTGGAGTCAACGTTAAGAGGTTACATTCAGTTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTAACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGGGCATCAATCACATTCCTTGACACCCCTGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGAGTGATGCCTCAAACACTCGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTTGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAAAGTAAAACTGCAGCTTGCTTCAGAGGGCTTGATGTTGGAGGAAATGGGTGGTGACATTCAGGTCATTGAAGTTTCAGCACTTCAAAAAACCGGACTGGATAACCTAGAGGAAGCTTTACTCCTTCAAGCCGAAATGATGGATCTGAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTGGTAGAAGCAAGGCTTGACAAAGGACGCGGTCCATTGATAACTACCATAGTTAAAGCAGGGACCTTAACTTGTGGTCAGTATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGTGGGAAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAAATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTTCTGGTAGGACAAGGAAATTTGAGGAGGATAGACTTAGGAGGAAGTTGAATGAGGGCATCCCATCTACATTGGAGTCATCAGAGGAGGTTCCGCAGAGGGTTGAGATGCCAATAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTGGTGAATGTTGTTCATGTTGGTGTTGGGCCCATCTCTCAATCTGACGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAATCCACCCACTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGTTGATTCTGCACCGTGTTATTTACCATCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCCCCTGGTACTTTTGAGACCCAGGTGGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAGGGAGCAAGTCAAAGGGACCTGATGTTAAGATAGCCGGTTGTCGGGTTGTAGAAGGTTTTGTGGTGAGGACAGGAACCATGAGGCTCCTGAGAAGCGGGGAAGTCGTGTTCGAAGGAAATTGTGCATCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAGAAGGGTAATGAGTGTGGATTAGTTATCAGTGATTGGTACGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTCGTCAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTCAGTGCTGA	2619	0.4609	MVQMGFQYLGTRGMRSGYERLGKQRCWVKSVNGRLRGIRLSRLKRLSLKAFTISKIMRMYNDVVNRMNLQEVFGNAAVVIPTQWGLPVISHHHHHPSVLSRSWSWLVQKRNLGRGFGGGSSLFARRTLPLAVPRSAIHPPPTTTIIINNRLKTQSSLLHAHTQIYYTYEWRGWSLERRRVAGSSSGPIYTAQSVYASARCMPDLISHTSVGVASFFSGTKGDIRCFHASPEVWARRGDEAFGLKAPKKEKYVRKEGRNQPPVEARYVPRNVKAPKSNPDKTVEVFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFEPLSMDTAELAAMEVGVNVKRLHSVEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLMLEEMGGDIQVIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQYVVVGSEWGRIRAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRTRKFEEDRLRRKLNEGIPSTLESSEEVPQRVEMPIIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKNPPTALSQAATRASIKLILHRVIYHLLEDIGNLIIEKAPGTFETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCRVVEGFVVRTGTMRLLRSGEVVFEGNCASLKREKQDVDTVKKGNECGLVISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIQC*	873

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g0832	872	Gene3D	Translation factors	755	857	-	-
	Ahy16g0832	872	Pfam	Elongation factor Tu GTP binding domain	356	512	IPR000795	GO:0003924\|GO:0005525
	Ahy16g0832	872	TIGRFAM	small_GTP: small GTP-binding protein domain	354	507	IPR005225	GO:0005525
	Ahy16g0832	872	CDD	mtIF2_IVc	761	850	-	-
	Ahy16g0832	872	CDD	IF2_eIF5B	354	518	-	-
	Ahy16g0832	872	SUPERFAMILY	Initiation factor IF2/eIF5b, domain 3	648	761	IPR036925	-
	Ahy16g0832	872	TIGRFAM	IF-2: translation initiation factor IF-2	280	855	IPR000178	GO:0003743\|GO:0003924\|GO:0005525\|GO:0006413
	Ahy16g0832	872	SUPERFAMILY	Translation proteins	756	857	IPR009000	-
	Ahy16g0832	872	Gene3D	-	348	523	IPR027417	-
	Ahy16g0832	872	Gene3D	-	649	753	IPR036925	-
	Ahy16g0832	872	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	350	521	IPR027417	-
	Ahy16g0832	872	Gene3D	Translation factors	524	637	-	-
	Ahy16g0832	872	ProSiteProfiles	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	351	521	IPR000795	GO:0003924\|GO:0005525
	Ahy16g0832	872	SUPERFAMILY	Translation proteins	525	607	IPR009000	-
	Ahy16g0832	872	PANTHER	TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL	211	863	-	-
	Ahy16g0832	872	Pfam	Translation-initiation factor 2	646	743	IPR023115	-
	Ahy16g0832	872	Hamap	Translation initiation factor IF-2 [infB].	12	858	IPR000178	GO:0003743\|GO:0003924\|GO:0005525\|GO:0006413
	Ahy16g0832	872	PANTHER	TRANSLATION INITIATION FACTOR IF-2-RELATED	211	863	IPR015760	-
	Ahy16g0832	872	CDD	IF2_mtIF2_II	527	620	IPR044145	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g0832	Ahy-Chr16	14908445	14917144	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g0832	342	836	Eukaryotic Initiation Factors Gene Family	AT1G76810	27.482	1.13e-29	125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g0832	K02519		-	gmx:100790572	1091.64

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g0832	16	14908445	14917144	Ahy6g0520	6	6341211	6346815	hybridization