Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0825 ATGGCTTCTTTGATTGGAGTTTCTTCCATATACCAAACTCCCTCTACAACTCTCGACCTACACAAACGACCACCGCTTACTACTACTACTTCTTCTTCCTCTCTTTCCTTGCAATGCTTGGACAGCAAGTCCCACTTCAACAACGTTCGCAGAGCACACCTTTCTACTAACAATGGCAAGGGAGGTTTTAAGCCCACTGTTAGTTTTGTTACTTCTGCCATTGCCACTCCAAATTCTTCGGTCCTCAGCGAAGAAGCATTCAAGGGGATAGGCAGCGGTGATGACTTCCCCGACGACGATGACTTTGCCGGCTTTGGCTCTGAAACCGACGAGGGATCTTCTGCTGTTAGCTCTGAAGAACTCGACGTTTCCAAGCTTGGCCTTCCTTCGCGCCTCGTTGATTCCCTCCTCAAGCGTGGGATTTCGCATCTTTTCCCCATTCAGAGAGCGGTGTTGGTACCGGCATTGGAAGGTAGGGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACACTAGCATTTGGGATTCCCATTATTAAAGGCCTTACTGAAGATGAACATTCAAGTTCTCTCAGGCGGTCTGGTCGCCTCCCCAGAGTGTTGGTTCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAGGAATCTGCACCTTATCTGAGCACAGTTTGTGTTTACGGGGGTGTTTCCTATGTTACTCAACAAAGTGCGCTTTCACGTGGAGTTGATGTAGTTGTTGGGACGCCTGGTAGAATAATTGACCTAATCAATGGGAACAGCCTTAGACTGAATGAAGTTCAGTACCTGGTCCTCGATGAAGCGGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATATTGGAAAAGCTCCCATCAGAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCAAGTTGGGTAAAGAAATTGGCTCGAAAGTATTTGGACAATCCATTGACAATAGATCTGGTTGGCGATGAAGAAGAAAAGCTCGCAGAAGGGATAAAACTTTTTGCTATATCAGCAACTGCCACTTCAAAGCGAACAATTCTTTCCGATCTTATAAGTGTTTATGCTAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCATTACATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGACAAGGAAAATTTACAGTTCTTGTTGCCACTGATGTTGCAGCCCGTGGACTTGATATTCCTAATGTTGATTTGATTATTCATTATGAGCTTCCCAATGATCCGGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCAGGGAAACAAGGTACTGCTATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCTCTAGAGCGTGATGTAGGCTGCAAATTTGAATTCATCAGTCCACCCGGTATACAAGAGATTTTGGAGGCATCTGCTGAGCAAGTTGTTGCCACGCTCAATAGGGTTCATCCCGAGTCTGTTGAGTTTTTTACACCAACTGCACAAAAATTGATTGAAGAACAGGGAACAAGTGCCCTTGCAGCTGCACTAGCACAAATGAGTGGATTCTCTCGTCCTCCATCGTCCCGATCTTTAATCAACCATGAACAGGGATGGGTTACATTGCAGTTGATCCGAGATTCAGATAGTAGAAGATACTTCTCCGCAAGATCAGTCACTGGGTTTCTGGCTGAGGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGGGCTGTTTTCGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAACAGGGAGATACCACCTGGAAACACTATAACCAAGGTTACCAAGTTGCCTGCCTTGCAAGATGATGGGCCACCAGGTGATTTCTATGGGAAGTTCTCTGACAGAGATCGTAGTAGCCGAAGAGGTTCAGGTTCTGGTTCTAGGGATCGGAGAGGCGGTTTTAGAAGCTCACGGGGATATGGAGGCCGAGACTCTGATGATGATTTTGGTGATTCATATAGGAGAGGCAGTAGAAGTAATAATAAAACTGGCAGTAGCTGGTCTCGAGCTGGAAGATCCAGTGGTGATGATTGGCCAATTGGCGGTAGACGATCATCAGGCAGATCTTCATCGTCAGACAGAGGTGGTTTTGGAGGGTCCTGTTTTAATTGTGGGGAGTCTGGGCATCGAGCATCAGATTGTCCAAACAAGCGCAGCTTCTTTTAG 2313 0.4548 MASLIGVSSIYQTPSTTLDLHKRPPLTTTTSSSSLSLQCLDSKSHFNNVRRAHLSTNNGKGGFKPTVSFVTSAIATPNSSVLSEEAFKGIGSGDDFPDDDDFAGFGSETDEGSSAVSSEELDVSKLGLPSRLVDSLLKRGISHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHSSSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLRLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLFAISATATSKRTILSDLISVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFISPPGIQEILEASAEQVVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLINHEQGWVTLQLIRDSDSRRYFSARSVTGFLAEVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLNREIPPGNTITKVTKLPALQDDGPPGDFYGKFSDRDRSSRRGSGSGSRDRRGGFRSSRGYGGRDSDDDFGDSYRRGSRSNNKTGSSWSRAGRSSGDDWPIGGRRSSGRSSSSDRGGFGGSCFNCGESGHRASDCPNKRSFF* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0825 770 MobiDBLite consensus disorder prediction 657 704 - -
Ahy16g0825 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 518 IPR001650 -
Ahy16g0825 770 MobiDBLite consensus disorder prediction 636 746 - -
Ahy16g0825 770 CDD DEADc 132 330 - -
Ahy16g0825 770 SUPERFAMILY Retrovirus zinc finger-like domains 731 768 IPR036875 GO:0003676|GO:0008270
Ahy16g0825 770 Pfam Zinc knuckle 749 765 IPR001878 GO:0003676|GO:0008270
Ahy16g0825 770 PANTHER - 65 761 - -
Ahy16g0825 770 Pfam GUCT (NUC152) domain 550 649 IPR012562 GO:0003723|GO:0004386|GO:0005524
Ahy16g0825 770 Gene3D - 106 332 IPR027417 -
Ahy16g0825 770 SMART ultradead3 140 346 IPR014001 -
Ahy16g0825 770 MobiDBLite consensus disorder prediction 99 120 - -
Ahy16g0825 770 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 65 761 - -
Ahy16g0825 770 Gene3D - 347 550 IPR027417 -
Ahy16g0825 770 MobiDBLite consensus disorder prediction 705 721 - -
Ahy16g0825 770 Pfam DEAD/DEAH box helicase 145 318 IPR011545 GO:0003676|GO:0005524
Ahy16g0825 770 Gene3D - 739 768 - -
Ahy16g0825 770 SMART c2hcfinal6 749 765 IPR001878 GO:0003676|GO:0008270
Ahy16g0825 770 CDD SF2_C_DEAD 343 472 - -
Ahy16g0825 770 CDD GUCT_Hera 557 629 - -
Ahy16g0825 770 SMART helicmild6 383 463 IPR001650 -
Ahy16g0825 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 329 IPR014001 -
Ahy16g0825 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 484 IPR027417 -
Ahy16g0825 770 Pfam Helicase conserved C-terminal domain 356 463 IPR001650 -
Ahy16g0825 770 ProSiteProfiles Zinc finger CCHC-type profile. 750 765 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0825 Ahy-Chr16 14864733 14869705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0825 147 485 Eukaryotic Initiation Factors Gene Family AT1G72730 39.368 4.35e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0825 - - gmx:100779706 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0825 16 14864733 14869705 Ahy19g1302 19 26418312 26425203 ECH
Ahy16g0825 16 14864733 14869705 Ahy16g0825 16 14864733 14869705 ECH
Ahy16g0825 16 14864733 14869705 Ahy6g0522 6 6373627 6378728 hybridization
Ahy16g0825 16 14864733 14869705 Ahy19g1302 19 26418312 26425203 PCT
Ahy19g1302 19 26418312 26425203 Ahy16g0825 16 14864733 14869705 PCT