Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0799 ATGAATCCATTAATGGGGGAGAATATGTTCAACTCCAGCCGCACAGGGATGACAAGAAGCTCCTCCTTGTTGCATGTGAATAAGGATATTGGTGAGCTGGTATGGGAAAATGGTGAAGTTAAAGTGCAAGGAAGAGGAGCAGCAGTGGAAGAAAGAGCAGCAAAGTTAGAGAGATTTTACTGCTCCTCAATTTTGGATCAAAGCAAGAAGCAGATCCAACAAGGATTTTCAAACTTCAAACTCATTAGTAATACATATTCCTCCTCCTTATCACAACAGTGCAAGAAACCAAGAATAATAGATTTTTCAGGTTCAGCACAAGCAACAACAAAATCACACACACTACAGCACTTGGGTACTTGCAATAATAATAATAATCAGAGAACATCATTAGGAGGAGGAATGGTGAACTTCCCAAACTTCTTGGTTCCTTCACTCTTACTCAACAAATCTTCTTCTGCTGCTGCTGCTGCCACTAGTAGTAAAGGTCATGATCATTCATCTGTGGTGATTGATTCTTCTAATAATAACAAAGCAGCAACACAAGAACTCAAAGAAACACCTTTTCATCAGGTACAACCACTTGATCGACACTCTCATGCTCAAAAACCATATCATGGAGCCTCATCAAGTTCAGCAGCACCACCACCACCTAATTACAATAGTAATAATAATATTGAGCAACACTTGGTAGTAGCATCTTCCCCTGTAAGCTCTATTGGAGCCTCAAACGACCCTGACATTGGTATTATGAGGAAGCAGCATGAGGAATACAGCAACATCACTGATCATGATCATGATGACACCACAACATATATAAGTGATGATGTAAGTGAAGAAGCTGGAACAACCACCCTGTGGCCTATAGTATCTATAATACATTATTATCTATTCATGCAGGATGATGAAGAAACAGAAGATGTAATAATAGCAAAGGAAACACCAGCTGCAGGTACCAGAGCCAAGAGAAGCAGGGACCCAGAGGTTCATAATTTATCTGACAGGGTCAACAAGAGGATTCATACATTGAAAGAACTCATACCCAATTGCAATAAGATTGATAAAGCTTCAACTCTTGATGATGCAATTGACTATCTTAAGACCCTGAAGCTTCAGTTGCAGATAATGTCAATGGGGAGAGGACTTTGCATGCCATTGATGATGTTACATAATCATCATAATCAGTTAATGTGTTATAGGCCATCATCAGGCACAGGCATTCCCCATCAAAACATGTTTGATGGTTTCTTCAACCAAATGAGGCCTATGATTATGCCACCATCACCACTTTTCATCAATCCCACTCCACCAATTGCGCCATTGTCAATCGCCAATTCTTCCAGTCTAGATGTCTCACATGTTCAAGCAATCAATAATGGTGATCAGGTTTCCCTTCACCAACACACAACTAGCAGCAGCTACCCCTTCTATTTTCCCACAATCATCAATCAGGAGGAAAAGAATAATTATGGAATGGAATAG 1482 0.4008 MNPLMGENMFNSSRTGMTRSSSLLHVNKDIGELVWENGEVKVQGRGAAVEERAAKLERFYCSSILDQSKKQIQQGFSNFKLISNTYSSSLSQQCKKPRIIDFSGSAQATTKSHTLQHLGTCNNNNNQRTSLGGGMVNFPNFLVPSLLLNKSSSAAAAATSSKGHDHSSVVIDSSNNNKAATQELKETPFHQVQPLDRHSHAQKPYHGASSSSAAPPPPNYNSNNNIEQHLVVASSPVSSIGASNDPDIGIMRKQHEEYSNITDHDHDDTTTYISDDVSEEAGTTTLWPIVSIIHYYLFMQDDEETEDVIIAKETPAAGTRAKRSRDPEVHNLSDRVNKRIHTLKELIPNCNKIDKASTLDDAIDYLKTLKLQLQIMSMGRGLCMPLMMLHNHHNQLMCYRPSSGTGIPHQNMFDGFFNQMRPMIMPPSPLFINPTPPIAPLSIANSSSLDVSHVQAINNGDQVSLHQHTTSSSYPFYFPTIINQEEKNNYGME* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0799 493 SMART finulus 331 375 IPR011598 GO:0046983
Ahy16g0799 493 Gene3D - 318 370 IPR036638 GO:0046983
Ahy16g0799 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 380 IPR036638 GO:0046983
Ahy16g0799 493 MobiDBLite consensus disorder prediction 204 224 - -
Ahy16g0799 493 PANTHER TRANSCRIPTION FACTOR PIF3 300 470 IPR044273 GO:0003700|GO:0006355
Ahy16g0799 493 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 278 - -
Ahy16g0799 493 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 300 470 - -
Ahy16g0799 493 MobiDBLite consensus disorder prediction 195 224 - -
Ahy16g0799 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Ahy16g0799 493 Pfam Helix-loop-helix DNA-binding domain 334 369 IPR011598 GO:0046983
Ahy16g0799 493 PANTHER TRANSCRIPTION FACTOR PIF3 5 278 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0799 Ahy-Chr16 14306517 14308988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0799 241 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.710 2.93e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy16g0799 HLH 1.80E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0799 K12126 - gmx:100804665 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0799 16 14306517 14308988 Ahy16g0799 16 14306517 14308988 ECH
Ahy16g0799 16 14306517 14308988 Ahy6g0543 6 6667948 6670215 hybridization
Ahy16g0799 16 14306517 14308988 Ahy19g1277 19 25468356 25471204 PCT
Ahy16g0799 16 14306517 14308988 Ahy9g1008 9 19903077 19905624 PCT
Ahy19g1277 19 25468356 25471204 Ahy16g0799 16 14306517 14308988 PCT
Ahy9g1008 9 19903077 19905624 Ahy16g0799 16 14306517 14308988 PCT