LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g0788	ATGGATGGTTTTGCGATTTGCAAAGGTCTCAGAATTCAGAATAACGAACAGAGTTTACTGATTTTGCAGTTTGCGATTTCTGTTTCAGCTCTCTCCGGATCTGCCGCACGGTGCCCTCTCGCCGCGCTTCCTCCTCTCGGCATCCCTGTCGTGCCGAGCTTCCATATCCATGCTCTTGGTGACACTACCAATGGCTGCAATTCCACGGGTCCTCACTTCAATCCTCTTAACAAATACCATGGAGCTCCTGCCGATCATCACCATCATGCTGGTGATTTGGGTAACATTCTTGCAGGCCCTGATGGGGTTGCTGAGATTTCTATCACAGATTCACAGATTCCGTTGAGTAGAGTGCATTCCATACTTGGCAGGGCGGTTGTTGTGCATGCTGATCCTGATGACCTTGGAAGGGGAATTGAGCCCTGGACTTTCGTTCAGAGGTTAGGAGAAGCTGTTTTCATTCCAACAGGTTGTCCTCACCAAGTCAGAAATCTGAAGCTGAAGAAAATTAGAGTACACACAATGAAAGATGTGGTTGAAAATTTGGAGAAAGCACGGTCTGGGAAAAGTGAGGTTCAGGATGGTTGCATATATTTACTGATGAACTAA	609	0.4696	MDGFAICKGLRIQNNEQSLLILQFAISVSALSGSAARCPLAALPPLGIPVVPSFHIHALGDTTNGCNSTGPHFNPLNKYHGAPADHHHHAGDLGNILAGPDGVAEISITDSQIPLSRVHSILGRAVVVHADPDDLGRGIEPWTFVQRLGEAVFIPTGCPHQVRNLKLKKIRVHTMKDVVENLEKARSGKSEVQDGCIYLLMN*	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g0788	202	SUPERFAMILY	Cu,Zn superoxide dismutase-like	52	145	IPR036423	GO:0006801\|GO:0046872
	Ahy16g0788	202	Pfam	Copper/zinc superoxide dismutase (SODC)	52	137	IPR001424	GO:0006801\|GO:0046872
	Ahy16g0788	202	Pfam	JmjC domain, hydroxylase	128	166	IPR003347	-
	Ahy16g0788	202	Gene3D	Superoxide dismutase, copper/zinc binding domain	40	157	IPR036423	GO:0006801\|GO:0046872
	Ahy16g0788	202	CDD	Cu-Zn_Superoxide_Dismutase	54	138	IPR001424	GO:0006801\|GO:0046872
	Ahy16g0788	202	PANTHER	SUPEROXIDE DISMUTASE CU-ZN -RELATED	53	140	IPR024134	-
	Ahy16g0788	202	PRINTS	Cu-Zn-superoxide dismutase family signature	89	98	IPR001424	GO:0006801\|GO:0046872
	Ahy16g0788	202	PRINTS	Cu-Zn-superoxide dismutase family signature	53	75	IPR001424	GO:0006801\|GO:0046872
	Ahy16g0788	202	PRINTS	Cu-Zn-superoxide dismutase family signature	108	130	IPR001424	GO:0006801\|GO:0046872
	Ahy16g0788	202	SUPERFAMILY	Clavaminate synthase-like	137	165	-	-
	Ahy16g0788	202	PANTHER	SUPEROXIDE DISMUTASE [CU-ZN] 3	53	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g0788	Ahy-Chr16	14135916	14142409	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Ahy16g0788		Sod_Cu	6.10E-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g0788	K04565		-	sind:105159637	154.836