Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0730 ATGAGAGAGAGAGAGCGAGAGTATGGGGAAAACACAGTGAGGGGTAGGTCTAAGGATCATGATAAAGATTTCAGGGTTTGGAATAGAGAAGAGTATCGACAGTTGGAATCTGAATCTTTCTCCATCTCCATCTTTGTGGATAATCTCCCGGAAGATATATCAAAAAGAGAGTTATTTCAGTTGTTCAACTGGACTGGGCGCATCAATGATATTTACCTGTCCCGAAAGTGGAAAAATGGAGACATTTATATGTTTGCCTTCATCCGGTACACGACGAAAGGAGGGGCGTTGAAAGCTATAGCGAAAATGAATCGCCTGAGGCTGAGAAGTAAGATTATCTTTGTAGGCGAGGCGAAGTACAGAAGAATGTCGGGACCAATGAATGGTGACAAGGGATGA 399 0.4311 MREREREYGENTVRGRSKDHDKDFRVWNREEYRQLESESFSISIFVDNLPEDISKRELFQLFNWTGRINDIYLSRKWKNGDIYMFAFIRYTTKGGALKAIAKMNRLRLRSKIIFVGEAKYRRMSGPMNGDKG* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0730 132 SMART rrm1_1 43 116 IPR000504 GO:0003723
Ahy16g0730 132 Gene3D - 1 125 IPR012677 -
Ahy16g0730 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Ahy16g0730 132 CDD RRM_SF 44 115 - -
Ahy16g0730 132 SUPERFAMILY RNA-binding domain, RBD 34 128 IPR035979 GO:0003676
Ahy16g0730 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0730 Ahy-Chr16 13325920 13326318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0730 39 121 Eukaryotic Initiation Factors Gene Family AT1G71770 28.916 2.02e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0730 K12891 - ahf:112805528 167.933