Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0726 ATGTCGAAGAGGAAGTTCGGATTTGACGGTTTCGGCATAAACCGCCAATCCACCTACAACTTCGAGCGATCCCAAGCTCCTCAGCGCCTCTACGTCCCTCCCTCTTCACGCCACGGCCACGACAATTACGAGGACACCGACCTCGACAACATCGATTACGACGACAACGACGCCGCCGGAAACGACAACAAAGCTGCCGGCGATGGCGGAGGTGGCAATAATGGTGGCGACGAGGAAATCGATCCGCTCGACGCCTTCATGGAAGGGATTCACGAAGAGATGAGGACGGCGGTGCCTCCGAAGCCAAAGGAGAAGGCGGAGGACAGGTACAAGGACGATGAGGAGGATGATCCAATGGAGAGCTTCTTGAGGGCGAAGAAGGACCTAGGGTTGACGTTGGCCTCGGAGGCTCTGCACGCTGGCTACGATTCTGATGAAGAGGTTTATGCTGCTGCTAAGGCTGTGGATGCCGGTATGATAGAGTATGATTCTGATGATAATCCTATAGTTCTTGACAAGAAGAAGATCGAACCCATTCCTGCACTTGATCACAGTTCTATTGATTATGAGCCCTTCAATAAGGATTTCTATGAGGAGGCACCTTCAATTTCAGGTATGAGTGAGCAAGATGTCACTGAATACCGGAAGAGTTTGGCTATTCGTGTGTCGGGATTTGATGTGCCTAAGCCAATAAAGACATTTGAGGACTGTGGGTTCTCTCAGCAAATTATGGGTGCTATAAAGAAACAAGGTTATGAGAAACCAACGTCTATACAGTGCCAAGCTTTACCAGTTATTCTTTCCGGTAGAGATATCATTGGCATTGCAAAAACTGGTTCTGGAAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAAGAGGGTCCTATAGGAGTTATATGCGCACCTACAAGAGAATTGGCACATCAGATATATCTTGAGTCCAAGAAATTTGCAAAAGCATATGGTATACGTGTGTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGTTGTGAGATAGTAGTTGCCACCCCTGGGAGGTTGATAGACATGCTAAAAATGAAGGCATTGACAATGACTAGAGCAACTTACCTGGTGCTTGATGAGGCTGACCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCGGATCGCCAGACTTTACTTTTTTCTGCGACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGAGAGATCCTTAGTGATCCTGTTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGACATTACTCAAGTTGTCCATGTAATTCCTTCTGATGCTGAAAAATTGCCTTGGCTTTTGGAGAAGTTGCCCGAGATGATCGATCAAGGTGATGTCCTAGTATTTGCTTCCAAGAAGGCTACTGTGGATGAAATTGAATCACAATTGGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCGTCTCGCATGGAAACTTTGCAGAAGTTTAAAGCTGGTGTCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGATATCAAGTCAATTAAATCTGTGGTGAACTTTGATATTGCAAAAGATATGGATATGCATGTCCATCGGATTGGGAGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAAAAAGAAGCACGCTTTGCTGGCGAACTGGTTAATAGCTTGATTGCTGCTGGTCAGAATGTATCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGGTTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGGAGAGGAGGTGGTGGTGGTGGTGGCGGTGGCCGGGGTGTGCGTGGAGTTGATTTTGGCCTTGGTATTGGATATAATCCCGAGTCCAACAGTGCTTCATCTAACACCCCTCCGAGCCGCTCTGCTGCTGTAAATTCTTTACGAACAGGAATGATGTCACAGTTTCGGAGTAGCTTTGTTGCTGCTTCCTCTAACTCCCAAAATCAAGGATATACTAACAATACAAGTATGGCTGCAAATAAGAGACCTGCACTTCGCGGTTTTGTATCTGGTGGATCAATTGGCGGGGATATAACTTCTCATAATAATGCTGCTTCACCCAGTCCTGCTATAGCAGCAGTAAACTCCGGTGGCCCAAATTCCGGTGTAAACCCTGCTCAGAACAACTCAAACAGCTCTAAACCCAGAGAAAGGAGGAGGCCATCAGGCTGGGATAGGTAG 2340 0.4667 MSKRKFGFDGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNDAAGNDNKAAGDGGGGNNGGDEEIDPLDAFMEGIHEEMRTAVPPKPKEKAEDRYKDDEEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVLDKKKIEPIPALDHSSIDYEPFNKDFYEEAPSISGMSEQDVTEYRKSLAIRVSGFDVPKPIKTFEDCGFSQQIMGAIKKQGYEKPTSIQCQALPVILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPEMIDQGDVLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMETLQKFKAGVYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGGGGRGVRGVDFGLGIGYNPESNSASSNTPPSRSAAVNSLRTGMMSQFRSSFVAASSNSQNQGYTNNTSMAANKRPALRGFVSGGSIGGDITSHNNAASPSPAIAAVNSGGPNSGVNPAQNNSNSSKPRERRRPSGWDR* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0726 779 Gene3D - 195 439 IPR027417 -
Ahy16g0726 779 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 438 IPR014001 -
Ahy16g0726 779 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 663 - -
Ahy16g0726 779 SMART helicmild6 491 572 IPR001650 -
Ahy16g0726 779 MobiDBLite consensus disorder prediction 93 117 - -
Ahy16g0726 779 CDD DEADc_DDX42 243 439 - -
Ahy16g0726 779 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 612 IPR001650 -
Ahy16g0726 779 MobiDBLite consensus disorder prediction 617 646 - -
Ahy16g0726 779 SMART ultradead3 251 453 IPR014001 -
Ahy16g0726 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 610 IPR027417 -
Ahy16g0726 779 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 232 260 IPR014014 GO:0003724
Ahy16g0726 779 Pfam DEAD/DEAH box helicase 256 427 IPR011545 GO:0003676|GO:0005524
Ahy16g0726 779 MobiDBLite consensus disorder prediction 13 31 - -
Ahy16g0726 779 Gene3D - 440 616 IPR027417 -
Ahy16g0726 779 CDD SF2_C_DEAD 450 582 - -
Ahy16g0726 779 Pfam Helicase conserved C-terminal domain 468 572 IPR001650 -
Ahy16g0726 779 MobiDBLite consensus disorder prediction 721 779 - -
Ahy16g0726 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 441 IPR027417 -
Ahy16g0726 779 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 663 - -
Ahy16g0726 779 MobiDBLite consensus disorder prediction 1 81 - -
Ahy16g0726 779 MobiDBLite consensus disorder prediction 728 765 - -
Ahy16g0726 779 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 384 392 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0726 Ahy-Chr16 13211849 13215786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0726 232 588 Eukaryotic Initiation Factors Gene Family AT3G13920 35.000 7.99e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0726 K12835 - gmx:100814854 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0726 16 13211849 13215786 Ahy16g0726 16 13211849 13215786 ECH
Ahy16g0726 16 13211849 13215786 Ahy6g0611 6 7528670 7532704 hybridization