Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0701 ATGGAAGAGGTTGTGATCATAATCAACGACTCGAAATTAATATCTGCGGTTGTTCCTCACTGTAGAATATGTCACGAAGAAGAGTTTGAGAGCTCAACAACCTTGGAAGCACCATGTGCTTGTTCTGGAACTGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACGATATGTGAATTATGTCTTCAGCAATATCAACCTGGATATACAGCACATCCTAAGAAGTCTCACATAAATGATGAAGCAATGTCCACTAGGATGGAGGAAGAAGAATCAAACGGAAGAATAGAGATAATGGATGAAGTGGAAGAGCAGCCAGAATGCAATGCTGCAACTCAAAGAAGCGCGTCTTGCTGTCGAACAATTGCATTAGCTTTTACATTTGTGTTGCTTGTAAGACATATATTCGCAGTGCTTTCAAGTGGAACGGAGGATTATCCATTTACACTTGTAACAGTTATTATACTAAAGGCTAGCGGAATAATTTTACCTATGTACATAATTATTAGAACGATCGGAGCCATTCACAACAGTGTTCAGCGACACTACGGGGATTATGAATATGCAATATCATTGTCTGATACAACTGACGAAAGCGAGTCAAGACGACTTGATGCATATGCAACAAGTATATAA 657 0.3912 MEEVVIIINDSKLISAVVPHCRICHEEEFESSTTLEAPCACSGTVKFAHRDCIQRWCNEKGNTICELCLQQYQPGYTAHPKKSHINDEAMSTRMEEEESNGRIEIMDEVEEQPECNAATQRSASCCRTIALAFTFVLLVRHIFAVLSSGTEDYPFTLVTVIILKASGIILPMYIIIRTIGAIHNSVQRHYGDYEYAISLSDTTDESESRRLDAYATSI* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0701 218 Pfam RING-variant domain 21 68 IPR011016 GO:0008270
Ahy16g0701 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 79 IPR013083 -
Ahy16g0701 218 ProSiteProfiles Zinc finger RING-CH-type profile. 13 75 IPR011016 GO:0008270
Ahy16g0701 218 SUPERFAMILY RING/U-box 19 73 - -
Ahy16g0701 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 208 IPR033275 -
Ahy16g0701 218 CDD RING_CH-C4HC3_MARCH 21 68 - -
Ahy16g0701 218 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 208 - -
Ahy16g0701 218 Pfam Protein of unknown function (DUF3675) 74 179 IPR022143 -
Ahy16g0701 218 SMART ringv_2 20 69 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0701 Ahy-Chr16 12886922 12889508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0701 21 68 C3H Transcription Factor Family AT5G05830 40.385 9.38e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0701 - - gmx:100802379 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0701 16 12886922 12889508 Ahy16g0701 16 12886922 12889508 ECH
Ahy16g0701 16 12886922 12889508 Ahy6g0633 6 7728051 7730613 hybridization