Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy16g0701 | ATGGAAGAGGTTGTGATCATAATCAACGACTCGAAATTAATATCTGCGGTTGTTCCTCACTGTAGAATATGTCACGAAGAAGAGTTTGAGAGCTCAACAACCTTGGAAGCACCATGTGCTTGTTCTGGAACTGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACGATATGTGAATTATGTCTTCAGCAATATCAACCTGGATATACAGCACATCCTAAGAAGTCTCACATAAATGATGAAGCAATGTCCACTAGGATGGAGGAAGAAGAATCAAACGGAAGAATAGAGATAATGGATGAAGTGGAAGAGCAGCCAGAATGCAATGCTGCAACTCAAAGAAGCGCGTCTTGCTGTCGAACAATTGCATTAGCTTTTACATTTGTGTTGCTTGTAAGACATATATTCGCAGTGCTTTCAAGTGGAACGGAGGATTATCCATTTACACTTGTAACAGTTATTATACTAAAGGCTAGCGGAATAATTTTACCTATGTACATAATTATTAGAACGATCGGAGCCATTCACAACAGTGTTCAGCGACACTACGGGGATTATGAATATGCAATATCATTGTCTGATACAACTGACGAAAGCGAGTCAAGACGACTTGATGCATATGCAACAAGTATATAA | 657 | 0.3912 | MEEVVIIINDSKLISAVVPHCRICHEEEFESSTTLEAPCACSGTVKFAHRDCIQRWCNEKGNTICELCLQQYQPGYTAHPKKSHINDEAMSTRMEEEESNGRIEIMDEVEEQPECNAATQRSASCCRTIALAFTFVLLVRHIFAVLSSGTEDYPFTLVTVIILKASGIILPMYIIIRTIGAIHNSVQRHYGDYEYAISLSDTTDESESRRLDAYATSI* | 219 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy16g0701 | 218 | Pfam | RING-variant domain | 21 | 68 | IPR011016 | GO:0008270 | |
Ahy16g0701 | 218 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 79 | IPR013083 | - | |
Ahy16g0701 | 218 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 13 | 75 | IPR011016 | GO:0008270 | |
Ahy16g0701 | 218 | SUPERFAMILY | RING/U-box | 19 | 73 | - | - | |
Ahy16g0701 | 218 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 208 | IPR033275 | - | |
Ahy16g0701 | 218 | CDD | RING_CH-C4HC3_MARCH | 21 | 68 | - | - | |
Ahy16g0701 | 218 | PANTHER | AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED | 1 | 208 | - | - | |
Ahy16g0701 | 218 | Pfam | Protein of unknown function (DUF3675) | 74 | 179 | IPR022143 | - | |
Ahy16g0701 | 218 | SMART | ringv_2 | 20 | 69 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy16g0701 | Ahy-Chr16 | 12886922 | 12889508 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy16g0701 | 21 | 68 | C3H Transcription Factor Family | AT5G05830 | 40.385 | 9.38e-07 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy16g0701 | - | - | gmx:100802379 | 295.434 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy16g0701 | 16 | 12886922 | 12889508 | Ahy16g0701 | 16 | 12886922 | 12889508 | ECH | |
Ahy16g0701 | 16 | 12886922 | 12889508 | Ahy6g0633 | 6 | 7728051 | 7730613 | hybridization |