Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0570 ATGGCAGAGTTCTCTTCCGCATCAACTCTTCCAACTCCACCTGAATCTCAAACTAGACTACACTTTGGGAAATTGCAGCACGGGTGCGAACACTACAAGAGACGTTGCAAAATTCGAGCTCCATGCTGCAACCAGATCTTCTCTTGCCGTCACTGCCACAACGACGCCATGGTTATATGTTCTATCTGTGATACTGAGCAAGAGGCTGCCAAGGTCTGTGCTAACTGTGGCGTCAACATGGGAGAATATTATTGTGAAATTTGCAAATTTTATGATGATATTACAGAGAAAGGACAGTTCCATTGCGACGAATGCGGGATTTGTAGGGTTGGTGGTCGTGATAATTTCTTCCACTGTCCGACGTGTGGCTCTTGCTATTCAGTGAGCTTGCAAGGCAACCACCCGTGTGTGGAGAACTCAATGAAGAGTTTCTGTCCTGTCTGTTATGAGTATCTGTTTGATTCAATAAAAGGCACCACAATTATGACTTGTGGACACACAATGCATATGGATTGCTTTGATGAAATGGCAGAGCAAAATCAGTATCGCTGTCCTATATGCTCAAAGACAATTTTTGATATGTCTCGGAACTGGGAACATTTAGATCAAGAGATTGAAGCTGTTCCCATGCCTGAGGAATATAATTTTGAGGTTTCTATTCTGTGCAATGATTGTAACAATACAAGCAGGGTTTCCTTTCACCTATTTGGTCACAAATGCAGAAACTGTAGTTCGTATAACACCCGCAGAATTTCAGCACCAGAAAGCTAG 771 0.4293 MAEFSSASTLPTPPESQTRLHFGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNDAMVICSICDTEQEAAKVCANCGVNMGEYYCEICKFYDDITEKGQFHCDECGICRVGGRDNFFHCPTCGSCYSVSLQGNHPCVENSMKSFCPVCYEYLFDSIKGTTIMTCGHTMHMDCFDEMAEQNQYRCPICSKTIFDMSRNWEHLDQEIEAVPMPEEYNFEVSILCNDCNNTSRVSFHLFGHKCRNCSSYNTRRISAPES* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0570 256 Pfam Zinc-ribbon 192 249 IPR039512 -
Ahy16g0570 256 SUPERFAMILY Zinc hairpin stack 81 138 IPR037275 -
Ahy16g0570 256 ProSiteProfiles Zinc finger RING-type profile. 145 188 IPR001841 -
Ahy16g0570 256 Pfam Ring finger domain 145 187 IPR001841 -
Ahy16g0570 256 SUPERFAMILY RING/U-box 144 194 - -
Ahy16g0570 256 ProSiteProfiles Zinc finger CHY-type profile. 22 107 IPR008913 GO:0008270
Ahy16g0570 256 SMART ring_2 145 187 IPR001841 -
Ahy16g0570 256 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 251 - -
Ahy16g0570 256 ProSiteProfiles Zinc finger CTCHY-type profile. 80 144 IPR017921 -
Ahy16g0570 256 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 21 251 IPR031109 GO:0008270|GO:0016567
Ahy16g0570 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 215 IPR013083 -
Ahy16g0570 256 Gene3D - 216 254 - -
Ahy16g0570 256 Pfam CHY zinc finger 29 90 IPR008913 GO:0008270
Ahy16g0570 256 SUPERFAMILY CHY zinc finger-like 26 79 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0570 Ahy-Chr16 10825534 10830121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0570 27 253 C2H2 Transcription Factor Family AT3G18290 41.633 3.11e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0570 K10144 - gmx:100818374 425.246