Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0552 ATGCCATACCGGATGCCACCGATGCAGAATCAACCCGGTTACCATAACATGATGCCGCACATGAATCAAGCAAATGCACTACGGCCCGAACTTGGCCCCAATATGAACCCAAGAAATTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTTCCAGGCCTACAACATCCAATCGCATACGCAGGAGGCATGATTAGTCCAAGGCCTATGAGTAGTTCTCCTGGTTCTATTTCACCTGCAGGTGGTAATGGCAACTCTGGTACATCATCTTCAAGTGCTAGCAAGAGTTCTGGGGGTCAAGTTGAAGGACCACCCGGTGCCAACCTGTTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCCACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTCGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCAGCCATTAGTATGATGAATGGGTGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGACAACAAGCAGAGTAAGCCTTACTGA 588 0.4524 MPYRMPPMQNQPGYHNMMPHMNQANALRPELGPNMNPRNYHVPPASYVGSYPAVPGLQHPIAYAGGMISPRPMSSSPGSISPAGGNGNSGTSSSSASKSSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0552 195 MobiDBLite consensus disorder prediction 72 104 - -
Ahy16g0552 195 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 1 182 - -
Ahy16g0552 195 CDD RRM3_CELF1-6 112 184 - -
Ahy16g0552 195 MobiDBLite consensus disorder prediction 72 105 - -
Ahy16g0552 195 PANTHER RNA BINDING PROTEIN 1 182 - -
Ahy16g0552 195 Gene3D - 83 187 IPR012677 -
Ahy16g0552 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Ahy16g0552 195 SUPERFAMILY RNA-binding domain, RBD 97 193 IPR035979 GO:0003676
Ahy16g0552 195 SMART rrm1_1 111 184 IPR000504 GO:0003723
Ahy16g0552 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0552 Ahy-Chr16 10350066 10351127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0552 103 195 Eukaryotic Initiation Factors Gene Family AT1G22760 34.409 5.99e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0552 K13207 - ahf:112756610 335.88