Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0481 ATGTCCATGATCCTTGCATTATCCTCTCCAACAAGTATGTTCCCTAATAACATGGAATGGCCCTTAGAGTTAGAAGAAGAAGAACTAAGTCATAGTCATGAATACTTCAACTCAGAAGAGTATCCATTACTCTCTTCTTCCATGGCCAAGAAATTTAATCACAATGCAAGCGAGCGCCACCGCCGCAAGAAGATCAATGCCTTGTACTCTTCTCTCCGGTCAATCCTCCCTGTTGCAGATCAAACGAAGAAGATGAGCATCCCAGCAACAATTTCAAGAGTGTTGAAATACATACCTGAGTTGCAACAACAGGTGGAAGAACTAATCAAGAAAAAGGAGGAGCTCTTGTTGAGAATTTCTCGGCAAGGGGATATTAATAACGATGATGCAGCAATGAACAAGAAAGGCCATCATCATCACAACTCTTCTGCCTTTCTGGTTTCATCAAGTAGGATCAGTGACAGTGAAGTTAGTATTCACATGATTTCTTCTTATGGAATTCAAAAGTGTCAAGTATCTGAAATCTTGGTGTGTTTAGAAAATCACTATGCCCTTCAACTGCTAAATGCTTCTTCCTTTGACACCTTTGGAGGAAGACTCTTCTACAACCTGCATTTTCAGATGGAAATGGCTCATACATTAGACACAGAAGTTCTAAGCGAGAAGATCTTGTCAATATGTGAGAAGCATCAAAGGATATAA 702 0.4003 MSMILALSSPTSMFPNNMEWPLELEEEELSHSHEYFNSEEYPLLSSSMAKKFNHNASERHRRKKINALYSSLRSILPVADQTKKMSIPATISRVLKYIPELQQQVEELIKKKEELLLRISRQGDINNDDAAMNKKGHHHHNSSAFLVSSSRISDSEVSIHMISSYGIQKCQVSEILVCLENHYALQLLNASSFDTFGGRLFYNLHFQMEMAHTLDTEVLSEKILSICEKHQRI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0481 233 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 27 229 - -
Ahy16g0481 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 101 IPR011598 GO:0046983
Ahy16g0481 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 119 IPR036638 GO:0046983
Ahy16g0481 233 Coils Coil 98 118 - -
Ahy16g0481 233 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983
Ahy16g0481 233 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 27 229 IPR015660 GO:0003700|GO:0006357
Ahy16g0481 233 CDD bHLH_AtORG2_like 50 122 - -
Ahy16g0481 233 Gene3D - 44 127 IPR036638 GO:0046983
Ahy16g0481 233 SMART finulus 55 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0481 Ahy-Chr16 8945004 8946601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0481 48 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 47.283 2.27e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy16g0481 HLH 1.90E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0481 - - gmx:100803424 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0481 16 8945004 8946601 Ahy6g0854 6 10712263 10713430 hybridization