LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g0426	ATGGGAACTGCCTCCAGGCAGTTGAAGGTTATGCTCCGCAAGAACTGGCTCCTCAAAATTCGTCACCCTTTCGTTACTGCAGCTGAGATATTGCTCCCTACGGTTGTGTTGTTGCTGTTAGTGGCTGTGAGGACTCAAGTTGACACACAAATTCATCCAGCTGAACCGCACATTCAGAAAGAGATGTTTGTGGAGGTGGGTAAAGGTATATCCCCTAACTTCCAACAAGTTTTGGCATCCTTGTTGGAGGAAGGGGAGTATTTAGCTTTTGCACCAGATACCGATGAGACGAAGCTGATGATAGATGTAGTGTCCATAAAATTCCCACTCCTGAAGCTTGTTAGTCGAGTGTACAAAGATGAGGTAGAGTTGGAAAGCTACATTCGCTCAGATGCTTATGGTACCTGCAGTCAAGCAAGGAATTGTTCAAATCCGAAAATTAAAGGAGCTGTTGTATTTTATGAACAAGGTCCTCAGTCGTTTGATTATAGCATACGCCTCAATCATACATGGGCATTCTCCGGTTTCCCAGATGTAAAAACAATAATGGACACAAATGGCCCATTTCTTAACGACTTGGAATTGGGTGTTAGTGCTGTACCAACAATGCAGTACAGCTTCAGTGGGTTTTTTACTCTCCAGCAAATGGTCGATTCATTTATAATATTCATTGCTCAACAGTCTGGCATAAATTCCAGCACTGAACGCATAACCCTTCCTCTATCAGGCTTCTATTACACTGATTTCTCTCTGAATGCTACATGGAATCAGTTTAATCCCACTCATATACGAGTATCTCCATTTCCCACTCGAGAGTACACTGATGATCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTATACCTATTGGGTTTTCTCTATCCAGTTTCGCGCCTCATCAGTTATTCTGTTTTTGAGAAGGAACAGAAGATTAAAGAAGGACTCTATATGATGGGCCTGAAAGATGGGATATTTCATCTCTCTTGGTTGATCACATATGCTTTGCAGTTTGCAGTGTCTTCCGGGATCATTACTGCTTGCACCATGGATAATTTATTCAAGTATAGTGATAAGACATTGGTGTTTGCCTACTTTTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTTATATCAACATTTTTCAAACGGGCCAAAACAGCTGTTGCAGTTGGAACGCTGTCTTTTCTTGGTGCTTTTTTCCCTTATTACACTGTCAATGATGAGGGTGTTTCAATGGTATTGAAGGTTCTTGCTTCTATACTTTCACCTACAGCCTTTGCTCTCGGGTCAGTTAACTTTGCTGATTATGAGCGTGCTCATGTGGGACTGCGTTGGACCAACATATGGCGGGAATCATCTGGAGTGAATTTTTCCCTATGTCTTTTGATGATGATACTTGATACACTGCTATATTGTGCAATGGGTCTATATTTTGACAAGGTTCTTCCACGGGAGTATGGACGGCGATATCCGTGGTCTTTTGTTTTCCGAAGAGACTTCTGGAGAAAGAATAAAACTGGAAAACACTGCCCCTCCAATTTTGAAGTTAAAGTTGATGGTAGGAATTCCGAGTCAAGACCTTCTATAGAAGCAATAAGCCTAGATATGAAACAACAGGAGCTTGATGGCAGATGCATTCAGATAAGGAATTTGCATAAAGTGTATGCTACTAGAAAAGGAGATTGCTGTGCTGTTAACTCCTTACAACTTACATTGTATGAACATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGTACAACAATCTCGATGCTTGTTGGTCTTCTTCCTCCTACATCAGGGGATGCTTTGGTGTTTGGAAAGAACATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTGTGCCCACAACATGATATACTCTTTCCCGAATTGACCGTAAGGGAGCATTTAGAAATATTCGCCATATTAAAGGGTGTTGATGAAGACTCACTGGAGGCTGCTGTTACCAATATGGCTGACGAGGTGGGCCTGGCTGATAAAATTAACAGTGTTGTGAGAGCTCTTTCTGGTGGCATGAAGAGAAAATTGTCTCTTGGAATTGCATTGATAGGGAACAGTAAGGTTATAATTCTTGATGAACCTACCAGCGGAATGGATCCATACTCAATGCGTTTGACTTGGCAGTTAATAAAAAAATTTAAGAAGGGCAGGATAATCTTACTAACAACTCATTCAATGGATGAAGCAGATGAACTAGGTGATCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCACTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACTCTTGTAAAGTCAGCTCCTACTGCTTCTATAGCTAGTGATATAGTATATCGTCATGTTCCCTCAGCAACCTGTGTAAGCGAGGTGGGAACTGAGATTTCCTTTAGGCTTCCGCTGGCATCTTCATCAGCTTTTGAGGGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCACTTTTGAACATGGAAATAAGTGGTAGTGGTAACGAAGACAGTCTTGGTATTGAAAGCTATGGTATATCAGTCACAACCCTAGAGGAGGTATTTTTGAGAGTTGCAGGATGTGACTATGATGGAGTCGAATGCTTCGAGGGAAATGATCATTCCCTTGTGTCTGACTCTGTGGCTTTGCTTGGATCTTATGACCATCCCTCCACCAAAAAATGTTTTTTAGGAAATTATAAGAAGTTCCTTGGTTTGATATCTAGCATAGTGGCAGGAGCTTGTGGTTTGATTTTTGCTATGGTTATAAGTTTCATAAACTTCGTGGGTATGCTGTGTTGTAGCTGTTGTCTCATTTCTAGGTCAACATTCTGGCAACACTCGAGAGCTTTATTCATTAAAAGGGCAATATCTGCTCGGAGAGATCACAAAACAATTATATTCCAGCTAATTATTCCTGCTGTTTTCTTGTTTATTGGCCTTCTTTTTCTCAAGCTCAAGCCACATCCTGATCAGCAGGGCCTGATCCTTTCAACTTCTTATTTTAATCCTCTGTTGACTGGTGGGGGTGGGGGAGGTCCAATTCCTTTTAATCTATCTTTGCCTATTGCTGAAAAGGTAGCACAAAATGTCAAAGGAGGGTGGATTCAAAGATACAAGCCAAGCTCATACAAGTTTCCTAATTCAGGGAAGGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACTCTAGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTCAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGAACAAAATAGTGATGGGAGCTTAGGCTACACTGTATTGCACAACTGTTCTTGCCAGCACGCTGCTCCCACCTTTATCAATGTTATGAACAGTGCCATTCTTAGACTTGCTACTGGTGACACAAATATGACAATTCAGACACGCAACCACCCACTACCAATGACACAAAGCCAGCTCGTACAACGTCATGACCTGGATGCCTTCTCTGCTGCAATTATTGTCAATATTGCGTTCTCTTTCATACCTGCCTCATTTGCTGTTCCCATTGTTAAGGAACGTGAAGTGAAAGCTAAGCACCAGCAGCTAATTAGTGGGGTTTCTGTCCTTTCATATTGGGCTTCTACATATATTTGGGACTTCGTGAGCTTCTTGTTTCCGGCCTCATTTGCCATAATTCTCTTTTACATTTTTGGTTTGGATCAATTTGTTGGAGGGGTATCTTTGTTACCGACTACACTGATGCTTTTGGAATATGGACTTGCAGTTGCATCATCAACTTACTGCCTTACATTTTTCTTTTTTGACCATACCATGGCTCAGAATGTGGTTCTTTTAATTCACTTTTTCACTGGATTGATTCTAATGGTTATCTCATTCATTATGGGACTTATACCAAACACAACAACTGCCAATACTTTTCTTAAGAATTTTTTCAGAATTTCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTGGCACTTCTACGGCAAGGAATGAAAGATAAAACAAGTGATGGGATATTTGACTGGAATGTTTCAGGTGCCTCTATTTGTTATCTTGCTATTGAGAGCATTGGTTACTTTTGTTTGACACTTGCACTTGAAGTTTGTCCCTCCCTCAAATTAACTCCGTTTATGATCAAGAAGTGGTGGCAGAGTTTAAACATCTTCCAGCGTAATACCACTTATCTGGAACCTCTCTTAGAACCTCCTTTGGAAACTGTTTCAATGGACTTTGATGAAGATGTGGATGTGAAAACCGAAAGAAATAGAGTACTTTCTGGTTCCCTCGATAATTCTATTATCTACCTGCGTAATCTTCGAAAGGTGTATTCTGAAGGGAAGTATCTAGGGGAAAAGGTTGCAGTAGATTCGTTAACCTTTTCGGTTCAGGAAGGAGAATGTTTCGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTTTCTATGTTATGCGGGGAAGAATCTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCTCGCCAATATATTGGATATTGTCCGCAATTTGATGCTTTATTGGAGTTTTTGACCGTTCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGAATACACTATAGATAATGTTGTTAAGGAAAAGATGGTGGAATTTGGCTTATTGAAGCATGCTAATAAACCGTCATTTACTCTTAGTGGGGGGAATAAAAGGAAACTATCTGTTGCAATCGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAACCATCTACAGGTATGGATCCCATCGCCAAAAGATTTATGTGGGATGTAATATCTAGGATCTCAACAAGAAGGGGGAAAACTGCAGTAATTCTAACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACCAGGATGGGAATAATGGTTGGTGGACGATTAAGATGCATCGGAAGTCCTCAGCATTTAAAAACAAGATTTGGGAATCATCTGGAACTAGAGGTAAAACCTACTGAAGTGAGTTCTGCAGACTTGCAAACGCTATGCCAAGCTATTCAGGAAAGAGTTCTCGATGTCCCTTCTCATCCTAGAAGCTTGCTTGGCGACCTTGAAGTTTGCATTGGTGCCACTGACTCCATTACTGCAGAAAATAGTTCCATTGCAGAGATTAGCTTGACACGAGAAATGATAAGCTTAATTGGGCGCTGGCTTGGCAATGAAGAAAGAGTCAAGACACTAATCTCCTGTACACCTGTCTCTGATGGAGCTTCTAGGGAACAATTATCTGAACAATTGTTTCGAGATGGTGGTATTCCATTACCCGTATTTTCCGAGTGGTGGTTGTCGAAACAAAAATTCTCAGAAATTGATTCATTTATACTTTCATCATTTCGGGGAGCAAGATGGCAAGGGTGCAATGGTTTGAACATCAGATACCAGATACCCTATGAAGAAGGTTTGTCTCTGGCTGATGTCTTTGGTCACCTTGAAGGAAACAGAGATAGATTAGGGATTGCTGAGTACAGCATCAGCCAGTCAACTCTGGAGACAATATTTAATCATTTTGCAGCTACTTCATGA	5640	0.409	MGTASRQLKVMLRKNWLLKIRHPFVTAAEILLPTVVLLLLVAVRTQVDTQIHPAEPHIQKEMFVEVGKGISPNFQQVLASLLEEGEYLAFAPDTDETKLMIDVVSIKFPLLKLVSRVYKDEVELESYIRSDAYGTCSQARNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVKTIMDTNGPFLNDLELGVSAVPTMQYSFSGFFTLQQMVDSFIIFIAQQSGINSSTERITLPLSGFYYTDFSLNATWNQFNPTHIRVSPFPTREYTDDQFQSIIKKVMGILYLLGFLYPVSRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWLITYALQFAVSSGIITACTMDNLFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSMVLKVLASILSPTAFALGSVNFADYERAHVGLRWTNIWRESSGVNFSLCLLMMILDTLLYCAMGLYFDKVLPREYGRRYPWSFVFRRDFWRKNKTGKHCPSNFEVKVDGRNSESRPSIEAISLDMKQQELDGRCIQIRNLHKVYATRKGDCCAVNSLQLTLYEHQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLEIFAILKGVDEDSLEAAVTNMADEVGLADKINSVVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKFKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIASDIVYRHVPSATCVSEVGTEISFRLPLASSSAFEGMFREIEGCMKKPLLNMEISGSGNEDSLGIESYGISVTTLEEVFLRVAGCDYDGVECFEGNDHSLVSDSVALLGSYDHPSTKKCFLGNYKKFLGLISSIVAGACGLIFAMVISFINFVGMLCCSCCLISRSTFWQHSRALFIKRAISARRDHKTIIFQLIIPAVFLFIGLLFLKLKPHPDQQGLILSTSYFNPLLTGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRYKPSSYKFPNSGKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDEQNSDGSLGYTVLHNCSCQHAAPTFINVMNSAILRLATGDTNMTIQTRNHPLPMTQSQLVQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWASTYIWDFVSFLFPASFAIILFYIFGLDQFVGGVSLLPTTLMLLEYGLAVASSTYCLTFFFFDHTMAQNVVLLIHFFTGLILMVISFIMGLIPNTTTANTFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGIFDWNVSGASICYLAIESIGYFCLTLALEVCPSLKLTPFMIKKWWQSLNIFQRNTTYLEPLLEPPLETVSMDFDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEGKYLGEKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARQYIGYCPQFDALLEFLTVQEHLELYARIKGVPEYTIDNVVKEKMVEFGLLKHANKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRMGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSADLQTLCQAIQERVLDVPSHPRSLLGDLEVCIGATDSITAENSSIAEISLTREMISLIGRWLGNEERVKTLISCTPVSDGASREQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARWQGCNGLNIRYQIPYEEGLSLADVFGHLEGNRDRLGIAEYSISQSTLETIFNHFAATS*	1880

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g0426	1879	CDD	ABC_subfamily_A	550	771	-	-
	Ahy16g0426	1879	ProSitePatterns	ABC transporters family signature.	1588	1602	IPR017871	GO:0005524
	Ahy16g0426	1879	CDD	ABC_subfamily_A	1451	1677	-	-
	Ahy16g0426	1879	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	947	1706	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Ahy16g0426	1879	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	6	1305	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Ahy16g0426	1879	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	1643	1876	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Ahy16g0426	1879	Pfam	ABC transporter	1473	1615	IPR003439	GO:0005524
	Ahy16g0426	1879	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1446	1683	IPR027417	-
	Ahy16g0426	1879	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	550	783	IPR003439	GO:0005524
	Ahy16g0426	1879	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	547	788	IPR027417	-
	Ahy16g0426	1879	Gene3D	-	1443	1693	IPR027417	-
	Ahy16g0426	1879	Gene3D	-	537	786	IPR027417	-
	Ahy16g0426	1879	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	1451	1689	IPR003439	GO:0005524
	Ahy16g0426	1879	SMART	AAA_5	1481	1668	IPR003593	-
	Ahy16g0426	1879	SMART	AAA_5	578	760	IPR003593	-
	Ahy16g0426	1879	Pfam	ABC-2 family transporter protein	230	480	-	-
	Ahy16g0426	1879	Pfam	ABC-2 family transporter protein	979	1381	-	-
	Ahy16g0426	1879	Pfam	ABC transporter	570	713	IPR003439	GO:0005524
	Ahy16g0426	1879	ProSitePatterns	ABC transporters family signature.	685	699	IPR017871	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g0426	Ahy-Chr16	8137767	8159861	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g0426	525	794	Calmodulin-binding Proteins	AT2G36910	25.532	5.81e-18	89.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g0426	K05643		-	gmx:100803263	3284.97

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g0426	16	8137767	8159861	Ahy16g0426	16	8137767	8159861	ECH
	Ahy16g0426	16	8137767	8159861	Ahy6g0902	6	11557725	11579444	hybridization