Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0387 ATGGAGAAAGGAGCGACTAAGAAGAAATCATCACCTCTCTCTCTGCAACAGTTCATCACTATCACCACCCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATATCAAGCTCAATCGCCACAGGCGCATCAAGGAATTTGGATACTGCTCAAAAGAGAGGTTCCACAATCCTTAACTTGAAGTGTGTGGATGTCCAGACAGGGCTTATGGGAAAATCTCTGATTGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCACGACGTCGTCGTTTTAAAACTCAACAAGGCTGATGTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTATAGATTAAAGGACTCATCAATAACTGTTGCTTTTGATGACATACCTGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCAGCTGCTGATCTAATTCCGGTCTTATTTGGGGAGAGGTCGCCAACAATGTCCAAGAAGGATGTTTCCTTCACTCCTTTTAATACCAAACTTGATCACTCTCAGAAAGGTGCAATTTCAAAAGCCCTATCTTCGAAGAATGTGTTTTTGCTACATGGACCTCCTGGAACTGGGAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTTAAACGTGGATCAAAGATTCTTGCTTGTGCTGCCTCAAACATTGCTGTTGATAACATTGTTGAGCGGCTAGTTCCACATAGGGTTAAGCTGGTGAGAGTAGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGCCTTGCAAATGACATTCGAAAAGAAATGAAGGCATTGAATGGAAAGCTATTGAAAACCAAAGACAAAAGTACAAGGAGAGACATACAAAGGGAACTTAGGACTCTATCCAAGGAAGAGCGCAAAAGGCAGCAGCTTGCTGTAACAGACGTACTTAAAACTGCAGATGTAATATTGACTACTCTGATTGGGGCCTATTCTAAGAAACTCGACAATATGTCATTTGATTTGGTAATTATTGATGAAGCTGCTCAAGCACTTGAAATTGCATGTTGGATTCCTCTGTTGAAGGGCTCAAGATGTATCCTCGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGTTTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATATATGGAGACGAGGTCACATCTATGCTTACAGTCCAGTACCGTATGAATGAACTCATCATGGATTGGTCTTCTAAAGAACTTTACAACAGCAAGATCGAGGCTCATGCTAGTGTTGCTGCACATACGCTACATGATCTTGACAATGTGAAGAAGACATCATCAACTGAACCAACTCTTCTTCTCATAGACATTGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACTCTTAATGAAGGTGAAGCTGAGGTTGCTATCGTTCATGCCAAGAGACTCGTTCAAAGTGGTGTGCCTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAGAAACAATGAGAATCAGCTGAAGGATGTCGAAATCTCAACAGTTGATGGGTTTCAGGGAAGGGAGAAGGAAGCCATTATTATATCCATGGTCCGATCCAACTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGTATGAATGTGGCTGTGACACGGGCACGAAGGCAATGCTGTCTTGTCTGCGACACCGAGACAGTCAGTAGTGATGCATTTCTGAAGCGGTTGATAGAGTATTTTGAAGAGCATGGCGAGTATCAGAGTGCATCCGAATACCAGAACGAGTAG 1944 0.4295 MEKGATKKKSSPLSLQQFITITTPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKADVGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALVQLSKGVHKGPAADLIPVLFGERSPTMSKKDVSFTPFNTKLDHSQKGAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDKSTRRDIQRELRTLSKEERKRQQLAVTDVLKTADVILTTLIGAYSKKLDNMSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEIYGDEVTSMLTVQYRMNELIMDWSSKELYNSKIEAHASVAAHTLHDLDNVKKTSSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAIVHAKRLVQSGVPPSDIGIITPYAAQVVLLKMLRNNENQLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDAFLKRLIEYFEEHGEYQSASEYQNE* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0387 647 PANTHER HELICASE WITH ZINC FINGER 2 8 645 - -
Ahy16g0387 647 CDD DEXXQc_SMUBP2 196 444 - -
Ahy16g0387 647 CDD SF1_C_Upf1 445 633 IPR041679 -
Ahy16g0387 647 SMART AAA_5 211 463 IPR003593 -
Ahy16g0387 647 Gene3D - 23 427 IPR027417 -
Ahy16g0387 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 8 645 - -
Ahy16g0387 647 Coils Coil 298 318 - -
Ahy16g0387 647 SMART ultradead3 193 444 IPR014001 -
Ahy16g0387 647 Pfam AAA domain 420 616 IPR041679 -
Ahy16g0387 647 Gene3D - 41 143 - -
Ahy16g0387 647 Pfam AAA domain 196 411 IPR041677 GO:0004386
Ahy16g0387 647 TIGRFAM TIGR00376: putative DNA helicase 345 642 IPR004483 GO:0003677|GO:0005524
Ahy16g0387 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 627 IPR027417 -
Ahy16g0387 647 Gene3D - 443 647 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0387 Ahy-Chr16 7495275 7501235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0387 170 380 Core DNA Replication Machinery Family AT1G08840 27.488 4.86e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0387 K19036 - gmx:100810545 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0387 16 7495275 7501235 Ahy16g0387 16 7495275 7501235 ECH
Ahy16g0387 16 7495275 7501235 Ahy6g0938 6 12213787 12219848 hybridization