Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0384 ATGGCTAACAACAACTCTTCTTACTCCAATCTCTTCTTCTCCTCTTCCTCTTCTTCTTCCTCTTCTTCCTTCTCCTCACCTCCAACACCAGCACCACCGCCCTTTTTCCAATTCAACCACCGTTATTTCCCTTATTATTACCACCACCATCACACTACTACTGCTTCTGCACCTTTCTCTTATTCCTCCTCATCTACTACTTCACCTCCTTCCCCTCCTCTCAGGGAAGAGCTTCCGCTTCTCACTCTCAGTCCCGCAAGGCCCGACACCAACCACCACCCTTCTTGCAGCACCACTTCCATGGATTTCGACGAAGAAGACGACGCCGACCCTGACGATGCTGATGCTGATGCGGATGCTGCTGATGCTACTACTGTGACGGTTGCACTGCACATAGGGCTTCCTAGCCCTAGCGCTGCGGAGATGGCATCCGTGCTCTCCGAGAAGGAGCACGGCGGAGGAGGCGAGGATTCCGGAGGCGGTGGTTCGACGGGGAACAAGGTGAACAAGGGACAGTACTGGATCCCAACCCCATCTCAGATTCTGATTGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAATATAGAAAAGGACCAGAATCTCTAAGGGGAACTCAACCAACAGGGATGTTAAGGTTACCATGCTATTGTTGTGCACCAGGGTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACACTGCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAAGCTTTTGGCTCTGGCCATGCAGCTTATGGCATTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGAATCCACCCAATAA 1050 0.4886 MANNNSSYSNLFFSSSSSSSSSSFSSPPTPAPPPFFQFNHRYFPYYYHHHHTTTASAPFSYSSSSTTSPPSPPLREELPLLTLSPARPDTNHHPSCSTTSMDFDEEDDADPDDADADADAADATTVTVALHIGLPSPSAAEMASVLSEKEHGGGGEDSGGGGSTGNKVNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEDDDPASEVEQDHESTQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0384 349 MobiDBLite consensus disorder prediction 330 349 - -
Ahy16g0384 349 MobiDBLite consensus disorder prediction 1 25 - -
Ahy16g0384 349 MobiDBLite consensus disorder prediction 57 71 - -
Ahy16g0384 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 292 IPR013087 -
Ahy16g0384 349 PANTHER ZINC FINGER PROTEIN WIP2 10 349 IPR043584 GO:0003700|GO:0010468
Ahy16g0384 349 SUPERFAMILY beta-beta-alpha zinc fingers 184 210 IPR036236 -
Ahy16g0384 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 10 349 - -
Ahy16g0384 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 215 IPR013087 -
Ahy16g0384 349 Gene3D Classic Zinc Finger 187 210 - -
Ahy16g0384 349 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
Ahy16g0384 349 SMART c2h2final6 272 292 IPR013087 -
Ahy16g0384 349 SMART c2h2final6 188 210 IPR013087 -
Ahy16g0384 349 MobiDBLite consensus disorder prediction 57 117 - -
Ahy16g0384 349 MobiDBLite consensus disorder prediction 139 171 - -
Ahy16g0384 349 SUPERFAMILY beta-beta-alpha zinc fingers 253 292 IPR036236 -
Ahy16g0384 349 Gene3D Classic Zinc Finger 250 325 - -
Ahy16g0384 349 MobiDBLite consensus disorder prediction 101 117 - -
Ahy16g0384 349 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0384 Ahy-Chr16 7460608 7462602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0384 74 349 C2H2 Transcription Factor Family AT3G57670 69.592 4.16e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy16g0384 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0384 - - vvi:100255592 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0384 16 7460608 7462602 Ahy16g0384 16 7460608 7462602 ECH
Ahy16g0384 16 7460608 7462602 Ahy18g0340 18 2921200 2923113 ECH
Ahy16g0384 16 7460608 7462602 Ahy13g0561 13 5832192 5834515 ECH
Ahy16g0384 16 7460608 7462602 Ahy6g0940 6 12269683 12271634 hybridization
Ahy16g0384 16 7460608 7462602 Ahy12g1595 12 86366564 86371102 PCT
Ahy16g0384 16 7460608 7462602 Ahy2g1355 2 71408754 71413314 PCT
Ahy12g1595 12 86366564 86371102 Ahy16g0384 16 7460608 7462602 PCT
Ahy2g1355 2 71408754 71413314 Ahy16g0384 16 7460608 7462602 PCT