Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0350 ATGGCTCCGGGGGGAAGAACTGCCACCAATAACCATAAGAACCAACCACCTTCCTCCACAGTTGAGTCTCTAAACGGCTTGAAATTCGGCCAAAAAATATATTTTGAGGATTTGGGTCTCTCCACACCGTCAATCACTTCTTCAACTTCATCTTCTTCTTCTGCTGTTGGTGTTCCCAAGAAGGGTAGGGGCGGTTCGGTTCAGCATGCTCAGCAGCCACCGAGGTGCCAGGTTGAGGGTTGCAAAGCAGATCTGAGTGATGCTAAGGCTTACTATTCAAGGCACAAAGTTTGTGCCATGCACTCCAAATCCCCCACTGTCACTGTTTCTGGGCTCCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGGAAACGAAGTTGCCGCAGGCGGCTTGCCGGCCATAACGAACGTCGGAGAAAGCCCCCACCATCCAGCAACTTCTTAACCTCTCGTTATGCAAGACTTTCTTCATCACTTTTTGATGATAGTGGCAAAGGTGGAAGCTTCGTGATGGAATTCGCTTCATACCCGAAGCTGGGTCTTAGAAACACAGTTCCAAATCCCAGATCATCTCAACCAATTTCCGGAACACTAAGCTGGCAGGGCTATTCAGAGACATCATCTGACCTTTTCTTGCAAGGTTCAGTGGGTGGGACAAGCATCCCCAATGTCAGACACCCTCCTCCTTCGAGCGAAAGTTATGCCGGCGTAGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGCCAAACATGGGGATCTAGTAACATGGCACCAAGTCTCGGGTTGAATAACATGTTGAATTTCAGTGGTGCACCTGTGACACAACTTGCTGCATCATCCCATGGTGAATCCATTCATCAAGTTCCGAATCCCTGGTGGTGTCCAAACAAGGTTGTCCCTGATCTAGGCCTCGGTCAATTCTCGCAGCTTCCTAATAGCCAAGTTCCCGGCGAGTTCGATGCACTGGAACCAGGTAGGAGGCATCATGGGAATCTAGAGTAG 1032 0.4913 MAPGGRTATNNHKNQPPSSTVESLNGLKFGQKIYFEDLGLSTPSITSSTSSSSSAVGVPKKGRGGSVQHAQQPPRCQVEGCKADLSDAKAYYSRHKVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSNFLTSRYARLSSSLFDDSGKGGSFVMEFASYPKLGLRNTVPNPRSSQPISGTLSWQGYSETSSDLFLQGSVGGTSIPNVRHPPPSSESYAGVADSSCALSLLSSQTWGSSNMAPSLGLNNMLNFSGAPVTQLAASSHGESIHQVPNPWWCPNKVVPDLGLGQFSQLPNSQVPGEFDALEPGRRHHGNLE* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0350 343 SUPERFAMILY SBT domain 74 154 IPR036893 GO:0003677|GO:0005634
Ahy16g0350 343 MobiDBLite consensus disorder prediction 324 343 - -
Ahy16g0350 343 MobiDBLite consensus disorder prediction 43 78 - -
Ahy16g0350 343 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 11 341 - -
Ahy16g0350 343 MobiDBLite consensus disorder prediction 43 57 - -
Ahy16g0350 343 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
Ahy16g0350 343 Gene3D - 66 137 IPR036893 GO:0003677|GO:0005634
Ahy16g0350 343 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 341 IPR044817 GO:0003677
Ahy16g0350 343 MobiDBLite consensus disorder prediction 7 23 - -
Ahy16g0350 343 MobiDBLite consensus disorder prediction 1 23 - -
Ahy16g0350 343 Pfam SBP domain 76 149 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0350 Ahy-Chr16 7021350 7024195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0350 27 330 SBP-box Gene Family AT2G42200 43.195 1.18e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy16g0350 SBP 9.00E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0350 - - ahf:112696101 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0350 16 7021350 7024195 Ahy16g0350 16 7021350 7024195 ECH
Ahy16g0350 16 7021350 7024195 Ahy6g0981 6 12904448 12907238 hybridization