Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0348 ATGTCCCATTTCCGGAAACTCCAGTTAACATACTTCATCTCCAAAATTTCCCACACTTGCCTTAAACCCTCGCTAAGCCCTAGATTCCACAGCGCCAAATCTGCTCCCCAATCCGCACTAAAAAACTGTGATTTCAAGTTCCCCTCGAAGGTCAGAAAGGAAGCACAAGTCGCATTGCTCGAGTACCTTCATTCCACAAGGAGCTTGCAGTTCCTTGATGCAGACAACATGTGCAAAAACTCGCCCTTTTTCCTCAACGATATTCTGAGCAAGGTTCTTCAGAAGAAGAAGATCGACACTGCTGCCAGCGACGTCAAGAAATCAATCTCGCGTTACCTCCGTTACCACCCAATTAACGAGTTCGAACCATTCTTCGAGAGTACAGGTTTGAAGCCTTTTGAATACTTGCACCTTCTTCCAAGGGACATGATGTTCATCAACGATGACACTGTGTTGATGGAGAATTATCATACTCTGTGTAACTATGGTGTTCCCAGGAACAAAATGGGAAAGATCTTCAAGGATGCACCTCAAGTTTTTCGATATGAAAGTGGGGTACTGGTGTCCAAGTTTCAGAGTTATGAAGAGCTTGGTGTGGCTTCTTCAACTTTGGTAAAGGTGATTTCTTTGAGCCCTAGGATTTTGGTTGGGGATGTTGACCTTTATCTTGTGAAGGTTTTGGAGAAATTGAATCGTCTTGTTGGTGAAGAAAAGGGTAGTACTTGGATTGAGGAGCAGTTGTTGGCTGAGAGTAGTTGTAATTTTGGGGTTATGCATGAGCTCTTGTGCTTGCTTGAGAAGGTTTACAGTGACAAAAAGTTGTTGGGTGAGATGATTGGCCAGCACCCTTTTGTTTGTTTTGAGGATTCTGGAGTTTGGGCATTGTCCCTCATTGTGTTCTTGGTGAAATTAGGGTTGTCCTTGGACCAAATAGCTATAATTTTTGTCAAGTTTCCGCAAATTGGGGTGTCGATGTTTCTGTCGAATTTGCGCAAATGTTTTACATTCCTGTCTGATATCGATATGCATGCTGCGGAGATTGGGAATATTTTCCAGTCTCATTCCTTGCTGATGGGTTCATTCACTATTAAGAAATCTAGTAGTTTGCTCAGTAGCTTGAATGTTGGCAAGAAAAGGGTCTGTAAGTTAGTGCAGGATAATCCGGAAGGGATGCAGAATTGGGCTGTGGGGAGGAAAATTCAGCCTTACCCTGAGGATAAGGAAATGAGGGCTCTGAAAACAGAGTTCTTGAAAACAAAGTTCTTGTTGAGCCTTGGATACGAAGAGAACTCGGAGGGAATAAAACAGGCTTTTAAGCTGTTTAGAGGTAAGGGAGATGAGCTTCAGGAGAGATATGATTTTATTGTTAATGCTGGCTTGGACGCTAAGGATGTTCGCGAAATGATTAAGGCTTCACCTCAGATTCTTAATCAGACCACAGATATGATCAACACGAAAATTGAGTATCTTGTGAATGAAGGATATCCTATATCAAGTTTAGTCGATTTCCCATCTTTTCTTTCCTATACACTTTGTAGAGTTAAGCTTAGGTTATCAATGTATAATTGGCTCAGAGACCATAGAGTTGTTCACCCCAGGCTTGCTTTGAGCACCATAGTTGCATGCTCAGAGGAATTATTCTTACGGTTGTATGTAAATCGGCATCCATCTGGCCTTCAAGTTTGGCAGGATTTGAAGTCCGAAATTTATCCTGAGAATAATAACATGATATGA 1734 0.4204 MSHFRKLQLTYFISKISHTCLKPSLSPRFHSAKSAPQSALKNCDFKFPSKVRKEAQVALLEYLHSTRSLQFLDADNMCKNSPFFLNDILSKVLQKKKIDTAASDVKKSISRYLRYHPINEFEPFFESTGLKPFEYLHLLPRDMMFINDDTVLMENYHTLCNYGVPRNKMGKIFKDAPQVFRYESGVLVSKFQSYEELGVASSTLVKVISLSPRILVGDVDLYLVKVLEKLNRLVGEEKGSTWIEEQLLAESSCNFGVMHELLCLLEKVYSDKKLLGEMIGQHPFVCFEDSGVWALSLIVFLVKLGLSLDQIAIIFVKFPQIGVSMFLSNLRKCFTFLSDIDMHAAEIGNIFQSHSLLMGSFTIKKSSSLLSSLNVGKKRVCKLVQDNPEGMQNWAVGRKIQPYPEDKEMRALKTEFLKTKFLLSLGYEENSEGIKQAFKLFRGKGDELQERYDFIVNAGLDAKDVREMIKASPQILNQTTDMINTKIEYLVNEGYPISSLVDFPSFLSYTLCRVKLRLSMYNWLRDHRVVHPRLALSTIVACSEELFLRLYVNRHPSGLQVWQDLKSEIYPENNNMI* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0348 577 Gene3D Transcription termination factor 3, mitochondrial 292 565 IPR038538 -
Ahy16g0348 577 PANTHER MITOCHODRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED 43 567 - -
Ahy16g0348 577 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Ahy16g0348 577 SMART mt_12 466 496 IPR003690 GO:0003690|GO:0006355
Ahy16g0348 577 SMART mt_12 170 200 IPR003690 GO:0003690|GO:0006355
Ahy16g0348 577 Pfam mTERF 264 401 IPR003690 GO:0003690|GO:0006355
Ahy16g0348 577 Pfam mTERF 413 547 IPR003690 GO:0003690|GO:0006355
Ahy16g0348 577 Pfam mTERF 159 388 IPR003690 GO:0003690|GO:0006355
Ahy16g0348 577 PANTHER CGI-12 PROTEIN-RELATED 43 567 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0348 Ahy-Chr16 6990279 6995157 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy16g0348 mTERF 3.30E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0348 - - lja:Lj1g3v4317450.1 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0348 16 6990279 6995157 Ahy16g0348 16 6990279 6995157 ECH
Ahy16g0348 16 6990279 6995157 Ahy6g0983 6 12916123 12920569 hybridization