Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0342 ATGGCCAAGCACCAATTGAATCGCGCCGATTGCCGCAGCACCACAATCAACCCCAAGCTTCGTTATGAAAGGGACGAAATCGCAAGGGCTGATTCCAAGATGTTTGAGTTGATATTTGGCGAAATGGAGAGGTTGCATCAACTAGTTACAAAACCAAGAGAACAAGTAGTTGATGCAAAGGCTCTGTTGGACATAACGAAATCCTTGGTAATGTTTGTGAAGGGGCATGCTAACGGTGTAGTCACTCTTTCAGAATTTGTATCGCACATTTTTGAAGAATTTGGAGGACAGGGTGGATCAAGTACTAGCACAGAAGAAGACTTTGTTCTGAATGGTCCCATCTATGCTAAAGTAATGCAGAGGAAGGCTGTTAATCGTAGAAGTAGGAAGCATGTGAGGCCCAATGAATTGGCTCGGCTAGAAGAGCTTGGCGGAGGTCTAAGAGAAGTAAAAGCTGATACAGATAAAAATATGTTAACGATGTTTAACATCTTAAGGAAAAATAGTGTTATTAAGCTTGAGAATCTGATTTTGAATAGGAACTCCTTTGCTCAAACAGTGGAGAATTTATTCGCTTTATCATTCTTAGTCAAAGATGGGCGGGCTGAAATAAAAGTCAACGAGGCTGGATCACACTATGCAGCACCTAGAAATGCCCCTCGTGCAAATGCAGTTCGTGTTGGGGATGTTGCTTTCAGTCACTTTGTGTTCAGATTGGATTTTAAGGATTGGAAGCTATTGATCGATTTTGTTGGGGTTGTGGAGGATCTAATGCCTCGTAGGGAATAG 789 0.4221 MAKHQLNRADCRSTTINPKLRYERDEIARADSKMFELIFGEMERLHQLVTKPREQVVDAKALLDITKSLVMFVKGHANGVVTLSEFVSHIFEEFGGQGGSSTSTEEDFVLNGPIYAKVMQRKAVNRRSRKHVRPNELARLEELGGGLREVKADTDKNMLTMFNILRKNSVIKLENLILNRNSFAQTVENLFALSFLVKDGRAEIKVNEAGSHYAAPRNAPRANAVRVGDVAFSHFVFRLDFKDWKLLIDFVGVVEDLMPRRE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0342 262 Pfam Nse4 C-terminal 171 257 IPR014854 -
Ahy16g0342 262 PANTHER UNCHARACTERIZED 15 106 IPR027786 GO:0005634|GO:0006281|GO:0030915
Ahy16g0342 262 PANTHER UNCHARACTERIZED 110 262 IPR027786 GO:0005634|GO:0006281|GO:0030915
Ahy16g0342 262 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 15 106 - -
Ahy16g0342 262 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 110 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0342 Ahy-Chr16 6917890 6920412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0342 24 262 Non-SMC Element family AT1G51130 46.388 1.54e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0342 K22825 - gmx:100781485 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0342 16 6917890 6920412 Ahy6g0989 6 13057694 13059419 hybridization