Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0336 ATGGGAATGGACTCTGAGAAGAACAGCCTCTGCAGATTGCAATGCTCCTATGCTTCCTTGGATGAAGTGTTCGAAATTGGGAAGGAGACTTACAGGGGGCAGCAATACAGCCAGATATACTTCGCTCGGCTTCACTTGATGCGCACTCTCTTGTATTCCCTCGTCTCCCAATGGAAACCCCAAACCCCTGTGTGCACTGTGTTGGGATTGGAACAGGGAAAAGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATACTTGATGAGTATTCTAAGGAGAGATCTGCGGTTCCACTTGTTAGGCCTCATAACTTCATGCACGACGATGATTATCTAGTGTTGGAGGATGAAAGCGGGAGAGTTAAGCTTGGCGGGGATCTCATATCGCCTTCTGTGTTTGTAACAGGAATTGTGGTTGCCTTACATGGAAAGGAAACGGGGGCAGGTGATTTTTCGGTTTTGGAAGTCCTAGAAGCTGGCCTACCACCACAGATAGAATTCCCTCTTAAATCAAGGGAAGACAAATACATTGTTCTTGTGTCTGGATTAAATGTGGGGAGCAGTGATTCTAATCCTCTTCAGCTTCAGCTTTTCATTGATCATATTACAGGGCATTTAGGAGATGAAAAGGAGCAAAGTATTGCATCTCAAATTGTTCATGTTGTCATTGCTGGAAATTCTATTGGCATACCACGTGGACTTGTTAATGGACAGAATTTGGCTTCAAAGGATCTCTCAAGGATTGCTGAACCAATAAAGGAACTGGATATTTTATTGAATCAGATTGCAGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAACGACCCTGCTAATTTCTCATTACCACAGCAGCCATTGCATAGATGCCTTTTTCCTGGTTCGGCAGCTTATAACACCTTTAGATCTTGTACAAATCCTCATTCTTTTGAGATTGATAATATCAGGTTTCTTGGCACGTCAGGTCAGAATGTAGACGATCTTGAGAAGTATTCTGATGCAAAAGATAAACTTGAATTCATGGAAAGGACACTAAGGTGGAGGCATATAGCACCTACAGCACCTAATACTCTAGGATGCTATCCTTATACTGATAGTGATCCCTTCTTCATTGAGAGCTGTCCTCATGTGTACTTTGTTGGCAATCAGAATAAATATGAATCTCGTGTCATAAAGGGATCTGAAGGGCAGTTTGTGAGACTCATAAGCGTCCCGAAATTCAGTGAATCTGGCGTTGCAGTTGTGGTAAATTTGAGGGATCTTGAATGCCATGCTCTCAGTTTTGGAACTCAATTCAGCTCATAA 1323 0.4293 MGMDSEKNSLCRLQCSYASLDEVFEIGKETYRGQQYSQIYFARLHLMRTLLYSLVSQWKPQTPVCTVLGLEQGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVRPHNFMHDDDYLVLEDESGRVKLGGDLISPSVFVTGIVVALHGKETGAGDFSVLEVLEAGLPPQIEFPLKSREDKYIVLVSGLNVGSSDSNPLQLQLFIDHITGHLGDEKEQSIASQIVHVVIAGNSIGIPRGLVNGQNLASKDLSRIAEPIKELDILLNQIAAGLPLDIMPGPNDPANFSLPQQPLHRCLFPGSAAYNTFRSCTNPHSFEIDNIRFLGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHIAPTAPNTLGCYPYTDSDPFFIESCPHVYFVGNQNKYESRVIKGSEGQFVRLISVPKFSESGVAVVVNLRDLECHALSFGTQFSS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0336 440 Pfam DNA polymerase alpha/epsilon subunit B 183 391 IPR007185 GO:0003677|GO:0006260
Ahy16g0336 440 Gene3D - 174 439 - -
Ahy16g0336 440 Pfam DNA polymerase delta subunit OB-fold domain 35 162 IPR040663 -
Ahy16g0336 440 CDD MPP_PolD2_C 182 434 IPR041863 -
Ahy16g0336 440 Gene3D - 41 165 - -
Ahy16g0336 440 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 6 434 IPR024826 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0336 Ahy-Chr16 6855551 6860268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0336 1 439 Core DNA Replication Machinery Family AT2G42120 74.943 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0336 K02328 - gmx:100780072 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0336 16 6855551 6860268 Ahy16g0336 16 6855551 6860268 ECH
Ahy16g0336 16 6855551 6860268 Ahy6g0994 6 13126524 13131237 hybridization