Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0206 ATGTCGAAAGATTCATCAATCTCGAGTTCTGACGATGATTCGGTTGTGTTCTTGGGGGATGTTACACCCCAAGGTAACCGTAACCGTAACCGTTACCGTCGTGTGCGTCGACGCATGCTTGAAGGTGACAACGGAATACCTGCCAACCCTAACCCTAACGATAACCGTAGCCTAATCGTTGGAGGTCATGATCTGCGTGCGAGGAGGACCGTGACGGGTAATAACCAGCCTAACCGTGACGGCAACGCTTCTGAAGAGAGTACTACAGCGACTAAGAAGGCAGCAGGTCAAGTAAGAAAGAGTGGTGATGCAAACTTTCAAGTCGGTGAGAGCAGCAAAATCCAAAAGAGGAAGACGAAGAAGAGGGGGAGGAAGAAGAAGAAGAAGGAGAACGACGATGTTTTGGATGAAATGAGGAATAAGTTGCTACGCGCCGGTTGGGAAATTGGGATTGATGAAAAAGATGAAGAAACTGTTTTCTATGATCTGAAAGGGAGAGCTTATACCAATTGCATCATAGCTGCGTACGAGTGTTTGAAAAAGAAGTATGAGGAGCACAAAGGAAGAGGGATCTATTATTTGAAGAATTTCAAGTTTACTCCCATCAAGGATGATGATTTCGAGAAGCTTCTGTCATGGAAAGATGCTAAGAAGAGAAAAAGAAAAGATGAAGCTCATGACCCAAACCCTAATAATAACGATCGTAATAAGAGGGGAAAGAATAGCAGGGAAGACGCGAACAAGAAGAAGCAGAAACAGAGGGTGGAAACGAGCAGGAAAGGAAAAGAGAAGGTTGTTTACGATGAATCTGATTCTGATTCTGATTCTGATTCTGACAAGGATCCAAATGATAACACGTGTCTTCTCTGTGCAAATGCTCGAGAAGGCACTCTAGTTTGTTGCGACGGTTGTCCTTCTTCTTTTCATCTGAGCTGCTTGAAATTACCTGGGGTTCCACCTGGTGACTGGTACTGCAGTTATTGCAGATGCAAATTTTGTGGGTTGATGACTGGTGCAGCTGATGATCCTATGTCACGCACATGTTGCTTTTGCGAGCATAAATATCATAGGTTCTGTTCACCCATGACTGGTGGTATCATCATTGATCTTTCAGATAATCCGTTACACTTTTGCAGTAACAAATGCGAACAGTTGTTTGCGAGAGTTCAAGGGCTTCTTGGGATCAAACATGAAATTGGAGATGGGTTTTCTTGCACTTTTTTATCTGGATTTGAGAATAATCGTCCTTCCCAACTTCCAGAATGTCATGACAAGCTGTTTAGTGCACTGAAAATAATGCAAGATGGATTCAAACCTGGATATGATCATAGAACAGGAGTAAATTTGATACAAAATGTTGTATACAGTCGTGGGTCAAAGTTCAATCGCATGAATCATACAATGTTCTTTACTGCAATTATGGAACGGGACGACGAGATTATATGTGTGGCATCTCTAAGGGTTCATGAAAACAAAGTAGCAGAGATGCCACTCATTACAACCCGTGGTATGTATAGGCGACAAGGAATGTGTACCCGCTTCATGACAGTCATCGAATCTGTACTAAGCAGTTTGGGTGTTGACTTATTGGTCATACCATCAATCAAAGAACGCGAGAAGATTTGGGTTTCAGTGTTTGGGTTTGAACCCTTTGATCTGGAAACGAAAACTAGAACTGAAAAAATGAAAATTTTAGTTTGCCCTGACTCGGTTATGCTGAAGAAAAACATTAACAGGGTTGTTTGA 1746 0.4238 MSKDSSISSSDDDSVVFLGDVTPQGNRNRNRYRRVRRRMLEGDNGIPANPNPNDNRSLIVGGHDLRARRTVTGNNQPNRDGNASEESTTATKKAAGQVRKSGDANFQVGESSKIQKRKTKKRGRKKKKKENDDVLDEMRNKLLRAGWEIGIDEKDEETVFYDLKGRAYTNCIIAAYECLKKKYEEHKGRGIYYLKNFKFTPIKDDDFEKLLSWKDAKKRKRKDEAHDPNPNNNDRNKRGKNSREDANKKKQKQRVETSRKGKEKVVYDESDSDSDSDSDKDPNDNTCLLCANAREGTLVCCDGCPSSFHLSCLKLPGVPPGDWYCSYCRCKFCGLMTGAADDPMSRTCCFCEHKYHRFCSPMTGGIIIDLSDNPLHFCSNKCEQLFARVQGLLGIKHEIGDGFSCTFLSGFENNRPSQLPECHDKLFSALKIMQDGFKPGYDHRTGVNLIQNVVYSRGSKFNRMNHTMFFTAIMERDDEIICVASLRVHENKVAEMPLITTRGMYRRQGMCTRFMTVIESVLSSLGVDLLVIPSIKEREKIWVSVFGFEPFDLETKTRTEKMKILVCPDSVMLKKNINRVV* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0206 581 ProSitePatterns Zinc finger PHD-type signature. 287 328 IPR019786 -
Ahy16g0206 581 SMART PHD_3 286 329 IPR001965 -
Ahy16g0206 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 381 IPR013083 -
Ahy16g0206 581 Pfam PHD-finger 287 331 IPR019787 -
Ahy16g0206 581 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 67 273 - -
Ahy16g0206 581 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 280 578 - -
Ahy16g0206 581 MobiDBLite consensus disorder prediction 218 271 - -
Ahy16g0206 581 MobiDBLite consensus disorder prediction 1 28 - -
Ahy16g0206 581 ProSiteProfiles Zinc finger PHD-type profile. 284 331 IPR019787 -
Ahy16g0206 581 MobiDBLite consensus disorder prediction 1 132 - -
Ahy16g0206 581 SUPERFAMILY FYVE/PHD zinc finger 259 330 IPR011011 -
Ahy16g0206 581 MobiDBLite consensus disorder prediction 69 95 - -
Ahy16g0206 581 MobiDBLite consensus disorder prediction 218 282 - -
Ahy16g0206 581 PANTHER PHD FINGER PROTEIN 12 67 273 IPR042163 GO:0003714|GO:0045892
Ahy16g0206 581 PANTHER PHD FINGER PROTEIN 12 280 578 IPR042163 GO:0003714|GO:0045892
Ahy16g0206 581 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 462 534 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0206 Ahy-Chr16 2145234 2159925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0206 281 577 PHD Transcription Factor Family AT4G14920 41.118 2.05e-74 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy16g0206 PHD 7.30E-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0206 - - ahf:112696224 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0206 16 2145234 2159925 Ahy16g0206 16 2145234 2159925 ECH
Ahy16g0206 16 2145234 2159925 Ahy6g1117 6 16416633 16430890 hybridization
Ahy16g0206 16 2145234 2159925 Ahy2g0615 2 9441196 9448656 PCT
Ahy2g0615 2 9441196 9448656 Ahy16g0206 16 2145234 2159925 PCT