Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0163 ATGGAGCCTTCAATTTACCAAAGTGAGCTGAATCTGGAGGCAACAGAATTAAGGTTAGGTTTACCTGGAAGAACCAACAACAAGAGGTCTTCACCTGAAGACAGATCCATGAGCATCAGCATCAGCAAGAACAGCAGCGTTGACTCTAGTGGTCCTAGTAACGCTACTGATCACGATGACGACGATGATGACCATCAAAATTCTGTCCAACCTGCAAAGGTTCAAGTAGTAGGGTGGCCACCAGTTAGATCGTTTAGGAGGAACAGTATGCAGCAACAAAAACAGAAGAAGGATGAACACAACAACAATAATGGTGATGGATCTGCGATGTACGTGAAGGTGAGCATGGCCGGTGCACCTTACTTGAGGAAGATAGATCTGAACATTTACAATAGTTACTCTCAACTCCTCAACGCCCTCCAGAATTTGTTCAAATGCAGTTTTGGTGAATATTCAGAGAGAGAAGGATACAACGGATCTGAATATGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGCTCGTTGGAGACGTTCCATGGGACATGTTCACGTGTTCCTGCAAGAGGCTTAGGATTGTGAAAGGATCAGAAGCAAAGGGGTTGGCTTCTTTATGA 618 0.4417 MEPSIYQSELNLEATELRLGLPGRTNNKRSSPEDRSMSISISKNSSVDSSGPSNATDHDDDDDDHQNSVQPAKVQVVGWPPVRSFRRNSMQQQKQKKDEHNNNNGDGSAMYVKVSMAGAPYLRKIDLNIYNSYSQLLNALQNLFKCSFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWDMFTCSCKRLRIVKGSEAKGLASL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0163 205 MobiDBLite consensus disorder prediction 16 107 - -
Ahy16g0163 205 Pfam AUX/IAA family 15 203 IPR033389 -
Ahy16g0163 205 PANTHER AUXIN-INDUCED PROTEIN 5 203 - -
Ahy16g0163 205 Gene3D - 103 205 - -
Ahy16g0163 205 MobiDBLite consensus disorder prediction 24 53 - -
Ahy16g0163 205 ProSiteProfiles PB1 domain profile. 109 201 IPR000270 GO:0005515
Ahy16g0163 205 MobiDBLite consensus disorder prediction 54 68 - -
Ahy16g0163 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 203 IPR003311 GO:0005634|GO:0006355
Ahy16g0163 205 SUPERFAMILY CAD & PB1 domains 102 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0163 Ahy-Chr16 1743187 1744618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0163 88 204 B3 DNA Binding Superfamily AT2G46530 32.479 1.13e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy16g0163 AUX_IAA 5.50E-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0163 K14484 - gmx:100792134 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0163 16 1743187 1744618 Ahy6g0106 6 1424841 1426252 hybridization
Ahy16g0163 16 1743187 1744618 Ahy12g0810 12 14610432 14611944 PCT
Ahy16g0163 16 1743187 1744618 Ahy9g1375 9 58110916 58115404 PCT
Ahy12g0810 12 14610432 14611944 Ahy16g0163 16 1743187 1744618 PCT
Ahy9g1375 9 58110916 58115404 Ahy16g0163 16 1743187 1744618 PCT