Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0146 ATGGCGAATCGGGTGGTGAAGGTGAAGAGGGAGACGATTGCGGCATGCATGACTTGCCCCCTCTGCAACAAGCTCTTCAGAGAAGCCACCACCATATCCGAATGCCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATCACAGATGAGGAATTAGAGTGCTGTCCAATATGCAACATTGACTTGGGTTGTGTTCCACTCGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGACAAAGACACCTGAACCTGCTGCCCCCTCGGTACCGTTACCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTGCACAAGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTGGTAGTCTGCGATCCTCTAGTTTTTCCATCGAAAAGTCCATTAAAAAGGAGGAAGAAGTACTAGAAGATCATCCTGGGAGTTCAAGTTCACCGGACACTTCAAATAAGTTTGCTGAAGATACTCGACAGAGTTCATCCCCTCGTGAAGGCAGTCAACCCTTACCAAATAAAGGAACAGAGAATGGTGCCGAATCATGGGATGCAAAATTGGATCTTTGGAAACCCTTGAATTGTTTAGTAGAAGTTGCAAGTAGGAGCAAATCTTTCAAGTCTAATGCACAAGGGTCTGATGCTAAACCAGAAACCATTCAAGTAAATGAGACTGATTCTCAAGTGCTAAAAATAAAAAATAAGGAAAATAAACGCAAGGGGAAGACTGAGGATGAAAAGACTAGCAGTTGTCCTGTCTCTTCTGATACAGTGAAACCCAATAAATCGCGTAGAGTTCGGCGTAGAAAGGAACCCCCTTTTGGGGAATCAGGCATATTACCCCAAGCTGTGCTGGATTCTAACAGCAGTAAACACTTAAGGAGTTGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAGAACCAGGAAGGAGACGCACCCTTGCCTCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGAAGCATACCTGTCTCATTTATCCAAAAATACTTAGTGAAGAAACTAGAGCTGACCAGTGAAGCAGAGATTGAGATTAAATGTATGGGGCAACCAGTGCTCCCTACACTGCGGCTACAAAATTTGGTTGAGTTGTGGCTGGATTCAGCCGCCACGTCACAGCGGATTCCAGCAACCATTGGGTCATCAGCAAAGGATTTTGTGATGGTCCTGGCCTATGCTCGGAAGGTCCCACATCCTTGA 1293 0.4478 MANRVVKVKRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVTKTPEPAAPSVPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKAGSLRSSSFSIEKSIKKEEEVLEDHPGSSSSPDTSNKFAEDTRQSSSPREGSQPLPNKGTENGAESWDAKLDLWKPLNCLVEVASRSKSFKSNAQGSDAKPETIQVNETDSQVLKIKNKENKRKGKTEDEKTSSCPVSSDTVKPNKSRRVRRRKEPPFGESGILPQAVLDSNSSKHLRSCPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKYLVKKLELTSEAEIEIKCMGQPVLPTLRLQNLVELWLDSAATSQRIPATIGSSAKDFVMVLAYARKVPHP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0146 430 MobiDBLite consensus disorder prediction 89 204 - -
Ahy16g0146 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Ahy16g0146 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 IPR044807 GO:0004842
Ahy16g0146 430 SUPERFAMILY RING/U-box 14 83 - -
Ahy16g0146 430 SMART ring_2 19 59 IPR001841 -
Ahy16g0146 430 MobiDBLite consensus disorder prediction 167 200 - -
Ahy16g0146 430 MobiDBLite consensus disorder prediction 229 301 - -
Ahy16g0146 430 MobiDBLite consensus disorder prediction 229 252 - -
Ahy16g0146 430 MobiDBLite consensus disorder prediction 253 273 - -
Ahy16g0146 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 - -
Ahy16g0146 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 103 IPR013083 -
Ahy16g0146 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Ahy16g0146 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Ahy16g0146 430 MobiDBLite consensus disorder prediction 114 150 - -
Ahy16g0146 430 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0146 Ahy-Chr16 1523338 1529276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0146 2 349 C3H Transcription Factor Family AT2G30580 53.276 1.12e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0146 K16277 - gmx:100793731 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0146 16 1523338 1529276 Ahy6g1185 6 17376720 17380562 hybridization