Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0141 ATGGCTGATGTTGAAGCAGAAGTTGCGACGGCACAACCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCAGAGGCGTCGATCTCGATGCTCTCTTGGACATGTCCACCGATGAACTTGTCAAGCTCTTCACTGCACGCGCCCGCAGAAGATTTCAACGCGGTTTGACGCGGAAGCCTATGGCGCTAATCAAGAAACTCCGTAAGGCGAAAAGGGAGGCTCCAGCCGGTGAAAAGCCAGAGCCCGTCAGGACTCACCTACGCAACATGATCATTGTGCCTGAAATGATTGGTAGCATCATTGGTGTCTACAATGGTAAGACCTTCAATCAAGTTGAAATCAAACCAGAAATGATAGGCCACTATCTAGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCTGGTATTGGTGCAACTCACTCCTCGAGGTTCATTCCTCTCAAGTGA 456 0.489 MADVEAEVATAQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0141 151 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 Gene3D 30s Ribosomal Protein S19; Chain A 8 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 Hamap 30S ribosomal protein S19 [rpsS]. 47 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 SUPERFAMILY Ribosomal protein S19 54 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 151 - -
Ahy16g0141 151 TIGRFAM uS19_arch: ribosomal protein uS19 18 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Ahy16g0141 151 Pfam Ribosomal protein S19 49 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 2 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy16g0141 151 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0141 Ahy-Chr16 1485759 1487840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0141 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.417 1.79e-92 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0141 K02958 - rcu:8280171 292.737