Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0140 ATGTCGTCGGAAGAGCCAACCGTGGCCGTAGAGCAACCTGCAGCTGAGCCCGAAGCAACCGCCGAGCCACCTCCGGAGGCAGAGCCCGAGAACCCAACTCCCAAGCCCAAGAAGGCCGCTAAGGAGCCCAAGCCCAAAAAACCCGCGGCTCCTAGATCTCGAAACCCCTCTCACCCTCCCTACGAAGAGATGGTTAAGGACGCGATTGTGACGTTGAAGGAGAAAAACGGTTCCAGTCAATACGCGATTCAGAAGTTCGTAGAAGAGAAACAGAAGCAGCTACCTTCCAACTTCAGGAAGCTCTTGTTGTATCATTTGAAGAAGCTCGTTGCTTCTGGAAAGCTCGTTAAGGTCAAAAGCTCCTTCAAGCTTCCTCCGGTCAGGTCTTCAGCTCCCAAACCCGCTTCTGCTGCCCCCGCCAAGAAGAAGGCTGCAGCTGCTAAGCCCAAACCAAAGCCCAAGCCCAAAGCTAAGCCTGCCTCTAAGGCCAAGGACACCAAAACTACTAAGTCAGCAGCAGCCAAAGCACCTGCCAAGGCCAAGGCCGCTGCAAAGCCCAAGCCCAAGCCCAAGCCAGCTGCTAAACCCAAGGCGGTTGCTGCTAAGACCAAGGCAGCTCCGGCCAAGTCTAAGGCCAAGGCTAAGACGGCGCCAGCTGCAAAGCCGAAGGCAGCTGCGAAGCCTAAACCGGCTGCTAAGCCCAAGCCCAAGCCCAAAGAGAGGCCCTCCAAGGCTTCTAGAACGTCGACGAGAACTTCACCGGGGAAGAAAGCCCCTGCAGCTAAACCTGCGGCGAAGAAGGCAGCTCCCGCGAAGAAGGCCCCTGCAAAGGGTGCAAAGGCGAAGACCGTGAAATCTCCTGCGAAGAAGGCGACGACGGCGAGAAGGGGGAGAAAGTGA 900 0.57 MSSEEPTVAVEQPAAEPEATAEPPPEAEPENPTPKPKKAAKEPKPKKPAAPRSRNPSHPPYEEMVKDAIVTLKEKNGSSQYAIQKFVEEKQKQLPSNFRKLLLYHLKKLVASGKLVKVKSSFKLPPVRSSAPKPASAAPAKKKAAAAKPKPKPKPKAKPASKAKDTKTTKSAAAKAPAKAKAAAKPKPKPKPAAKPKAVAAKTKAAPAKSKAKAKTAPAAKPKAAAKPKPAAKPKPKPKERPSKASRTSTRTSPGKKAPAAKPAAKKAAPAKKAPAKGAKAKTVKSPAKKATTARRGRK* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0140 299 MobiDBLite consensus disorder prediction 31 49 - -
Ahy16g0140 299 Pfam linker histone H1 and H5 family 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy16g0140 299 SUPERFAMILY "Winged helix" DNA-binding domain 54 135 IPR036390 -
Ahy16g0140 299 MobiDBLite consensus disorder prediction 1 68 - -
Ahy16g0140 299 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy16g0140 299 PANTHER HISTONE H1 169 299 - -
Ahy16g0140 299 PANTHER HISTONE H1 2 207 - -
Ahy16g0140 299 MobiDBLite consensus disorder prediction 115 299 - -
Ahy16g0140 299 Gene3D - 52 131 IPR036388 -
Ahy16g0140 299 CDD H15 56 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy16g0140 299 PANTHER HISTONE H1.1 169 299 - -
Ahy16g0140 299 PANTHER HISTONE H1.1 2 207 - -
Ahy16g0140 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy16g0140 299 PRINTS Histone H5 signature 185 202 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy16g0140 299 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy16g0140 299 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy16g0140 299 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0140 Ahy-Chr16 1464635 1466032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0140 59 126 Single Myb Histone (SMH) Gene Family AT1G72740 33.824 6.00e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0140 K11275 - pvy:116120946 139.428