Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0136 ATGGAAGGGAAGTATTATGTGGCAAGAAACAACAAGAAGCAGCACAAAGAGGACAACAATAACAATAATAATACAAGCTTTGAAATGGAGGAGCAGCATCGTAGTAGTATTTGTTCATCATCGTGGCCTGCGAGGAACTATGGGTGTAGCTTTTGCAAGAGAGAGTTCAAATCCGCACAAGCATTGGGTGGACACATGAATGTTCATAGAAGAGATAGGGCAAGATTGAGATCATCATCATCATCATCATCAATATGGCTTTCTGATAAACCTAATAAACCTAACCCTAGCAGCATCCTAAAGCCTAATAATAACAAGCACCCAATAATACCTTCCTCTTCATCTCTTTATTATAGCCCTAGTAGCATTACTTTGTGCTCTTATTCTTCTTCAGCTTCCACAAGTAGCTGCGATAAGAAACCAACACTCATCACATCACACCTTCTTCCTCCCCCTCAAACGATCAGTAACAACACCACAGTCACAGCAAGGTGGAGTAGTAATGCTATAATGGAAGATGATGATAAGCACAACCACAACATCGCCTTGGAATTGGGAATAGGCTTGCTTAAGCACCCAACTAACAACTTAGATTTGGAGCTTCGATTAGGCCAATGA 618 0.4094 MEGKYYVARNNKKQHKEDNNNNNNTSFEMEEQHRSSICSSSWPARNYGCSFCKREFKSAQALGGHMNVHRRDRARLRSSSSSSSIWLSDKPNKPNPSSILKPNNNKHPIIPSSSSLYYSPSSITLCSYSSSASTSSCDKKPTLITSHLLPPPQTISNNTTVTARWSSNAIMEDDDKHNHNIALELGIGLLKHPTNNLDLELRLGQ* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0136 205 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Ahy16g0136 205 MobiDBLite consensus disorder prediction 1 19 - -
Ahy16g0136 205 MobiDBLite consensus disorder prediction 64 106 - -
Ahy16g0136 205 MobiDBLite consensus disorder prediction 78 106 - -
Ahy16g0136 205 SUPERFAMILY beta-beta-alpha zinc fingers 44 73 IPR036236 -
Ahy16g0136 205 Pfam C2H2-type zinc finger 47 71 - -
Ahy16g0136 205 PANTHER OS07G0101800 PROTEIN 9 204 - -
Ahy16g0136 205 MobiDBLite consensus disorder prediction 1 28 - -
Ahy16g0136 205 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 9 204 - -
Ahy16g0136 205 Gene3D Classic Zinc Finger 26 98 - -
Ahy16g0136 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0136 Ahy-Chr16 1388758 1389375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0136 31 204 C2H2 Transcription Factor Family AT3G23130 37.838 3.88e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy16g0136 zf-C2H2_6 8.30E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0136 - - adu:107493056 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0136 16 1388758 1389375 Ahy6g1195 6 17582813 17583875 hybridization
Ahy16g0136 16 1388758 1389375 Ahy12g0854 12 16501026 16502242 PCT
Ahy16g0136 16 1388758 1389375 Ahy2g0726 2 12577953 12578639 PCT
Ahy12g0854 12 16501026 16502242 Ahy16g0136 16 1388758 1389375 PCT
Ahy2g0726 2 12577953 12578639 Ahy16g0136 16 1388758 1389375 PCT