Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0128 ATGCTCATATCTCATATGGCATTGAACCACAACCACACTCACTTTGAAGAATATCAACATCAACCTTCATCAGATTCTTCTCTACTCATATTTGTTATTGTCCTGCCTCTCATACCGCCCACACTTTTCATACTCATTACCTACTTATCTTTTGTTACAAAATGCTGCTCAAATTGCCACCATGTTAACCCTCTAAGATGGATCTCCTTCCTGCGGATGCATCCGCATCCACACGATGAAGATCCCTTCATAGCATTCTCTCCAAGGATCCTCAACCTTGGCTTAGATGAATCTTCCATCCAAGAAATCCCAGCATTTCAATTCACAAAAGATTTTCAAAGCATCTCTGCCTGTGTGGTTTGTTTGACAGAGTTTCAAGAAAGGGAAATGCTCAAAGTTCTTCCAAATTGCAACCATGCATTTCACTTGGATTGCATTCATATTTGGCTTCAAACCAATGCAAATTGCCCTCTCTGCAGAACAAGTATCTCCGGCAACACGCAGCTTCCAACTGACCGTATCATAGCCCCCAGTTCTTCCCCTCAGGACTCTCACTTGCTCTCTAACATGGCAAGTGATGAAGATTTTGTGGTCATTGAAGTTGGAGCAGAACATGAAGGAATTACAACACTGCCACAGATGCAGCAACAAGTGATGAATAATGACTCAGGGGAAAGCATAGCACACAGTAGGAGTTACTCTAGCTTTGCAAGGAAGAAACCATGGAAGTGCCACCATGTTTCAATAATGGGAGATGAGTGCATTGATGTTGGAAAGAAAGATGATCAATTCTCTTCTCTTCAGCCTATTAGAAGATCCTTTTCAATGGATTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAAGCCATTATTCATCAAAATAGGCATAATCAGAATCATGCTAGTGCCAGTGAAGATTGTAATAGCAGAACCAGAAGATCATTCTTTCCATTCCGTTATTGCCGTGGATCCAAAAGTGCAATCATTCCTCTGGAAAATGAGGTTTAA 1011 0.4095 MLISHMALNHNHTHFEEYQHQPSSDSSLLIFVIVLPLIPPTLFILITYLSFVTKCCSNCHHVNPLRWISFLRMHPHPHDEDPFIAFSPRILNLGLDESSIQEIPAFQFTKDFQSISACVVCLTEFQEREMLKVLPNCNHAFHLDCIHIWLQTNANCPLCRTSISGNTQLPTDRIIAPSSSPQDSHLLSNMASDEDFVVIEVGAEHEGITTLPQMQQQVMNNDSGESIAHSRSYSSFARKKPWKCHHVSIMGDECIDVGKKDDQFSSLQPIRRSFSMDSANDRQVYLDVQAIIHQNRHNQNHASASEDCNSRTRRSFFPFRYCRGSKSAIIPLENEV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0128 336 SUPERFAMILY RING/U-box 111 166 - -
Ahy16g0128 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
Ahy16g0128 336 Pfam Ring finger domain 117 160 IPR001841 -
Ahy16g0128 336 PANTHER RING-H2 FINGER PROTEIN ATL16 9 333 IPR044600 GO:0016567|GO:0016740
Ahy16g0128 336 SMART ring_2 118 159 IPR001841 -
Ahy16g0128 336 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 333 - -
Ahy16g0128 336 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0128 Ahy-Chr16 1267865 1269648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0128 18 297 C3H Transcription Factor Family AT1G04360 41.158 4.86e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0128 K19041 - gmx:100809883 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0128 16 1267865 1269648 Ahy16g0128 16 1267865 1269648 ECH
Ahy16g0128 16 1267865 1269648 Ahy6g1205 6 17757929 17759435 hybridization