Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0098 ATGGCAGGTTTATTCTCTCTAGGTCCACATCATAGCAAACAAGAAGAACAAGATCAAGAAGAAAACAACAACAACAACAGCAACATCCAATTGCTATTGAGAAACGAAGAGATCTACACCAACAGCAGCACCACCAACACCAACACCAACAGAGGGTTCGAGATATGGCCTCATCATCATCAACCAAGCTACTACTCCTTCGGTTTGGGTCCGTCTAGCGAGAGAAACACCACCACAAACCTAAACGACGACGTTTCGGTGTCTTTCTCTGATGAGTCTAACCGGTTCGGGTTCACCGTCATGAGATCTTCTTCTTCCGGATCGGGTTTAGGAAGCGGCACCAATTGTCAAGACTGCGGTAACCAAGCCAAGAAAGACTGCGTCCACCTTCGCTGCCGAACCTGCTGCCGAAGCCGAGGGTTTCAATGTTCTACTCACGTTAAAAGCACCTGGGTTCCTGCTGCCAAACGACGCGAGCGCCAACACACTCTCGCGTCGTTACAGCAGCAGCAACCGGGGAGAGCAGGAGAAGGAGAAGGAGGAGGCGGCGATGTTCACTCTAGACGAACTAGAGAAGCCTCCGCCTGTGTTCCCATGCCGATTACCACTACAGGGTTGGAACTAGGGCAATTCCCTCCGGAGTTGAACTCACCGGCGGTGTTCCGGTGCGTCAAAGTCAGCCCAATGGACGCACCTGATGAGAGGTACGCGTATCAAACGGCTGTCAATATAGGAGGCCATGTTTTCAAAGGGATTCTCTACGATCAAGGTCCAGATGGTCCTTTCGCCACCAATGCCGCCACCGCCGGCGAAGGCTCCTCCCACGGAGGAGCTGAGCCTCATCATCAACAACTGAGTCTCATAACAACCACCACCGGTGCCGGCATCACATTTGACCCTTCACAGCTTTATCCGGCGCCGATGAACGCTTTCATGGCCGGTACGCAATTCTTTCCGCCCCCGAGAACCTAG 972 0.5278 MAGLFSLGPHHSKQEEQDQEENNNNNSNIQLLLRNEEIYTNSSTTNTNTNRGFEIWPHHHQPSYYSFGLGPSSERNTTTNLNDDVSVSFSDESNRFGFTVMRSSSSGSGLGSGTNCQDCGNQAKKDCVHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQHTLASLQQQQPGRAGEGEGGGGDVHSRRTREASACVPMPITTTGLELGQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPDGPFATNAATAGEGSSHGGAEPHHQQLSLITTTTGAGITFDPSQLYPAPMNAFMAGTQFFPPPRT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0098 323 MobiDBLite consensus disorder prediction 1 24 - -
Ahy16g0098 323 MobiDBLite consensus disorder prediction 158 191 - -
Ahy16g0098 323 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 321 - -
Ahy16g0098 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 321 IPR007818 GO:0003700|GO:0006355
Ahy16g0098 323 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 115 157 IPR006510 -
Ahy16g0098 323 Pfam Domain of unknown function (DUF702) 113 259 - -
Ahy16g0098 323 MobiDBLite consensus disorder prediction 263 282 - -
Ahy16g0098 323 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 210 258 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0098 Ahy-Chr16 948048 950013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0098 1 323 C2H2 Transcription Factor Family AT1G75520 42.432 5.72e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy16g0098 DUF702 1.10E-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0098 - - gmx:100807290 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0098 16 948048 950013 Ahy17g2324 17 112188418 112191351 ECH
Ahy16g0098 16 948048 950013 Ahy13g0748 13 7833116 7834599 ECH
Ahy16g0098 16 948048 950013 Ahy16g0098 16 948048 950013 ECH
Ahy16g0098 16 948048 950013 Ahy6g1247 6 18606309 18608062 hybridization
Ahy16g0098 16 948048 950013 Ahy17g2324 17 112188418 112191351 PCT
Ahy16g0098 16 948048 950013 Ahy8g0092 8 1559607 1562513 PCT
Ahy17g2324 17 112188418 112191351 Ahy16g0098 16 948048 950013 PCT
Ahy8g0092 8 1559607 1562513 Ahy16g0098 16 948048 950013 PCT