Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0088 ATGGATGATGCTGGGCACCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTAGCCCCGGACAGTGGTTGATGCAACATCAGCCTTCTATGAAACAAATTATGGCTCTTATGGCTGAAAGGGATGCACTTATTCAAGAAAGAAACCTGGCTCTTTCTGAGAAGAAGGCAGCACTTGCAGAGCGCGACATGGCATTCCTGCAGCGGGATGCTGCAATCACAGAACGAAATAATGCTTTAATTGAACGAGACAATGCAATTGCTGCACTTCAATATCGTGAAAATTCCCTAACCAACAGCAGTATGCCGTCCTCATGCCCTCCTGGATGCCAAATCTCACGGGGTATCAAACATATGCATCATCCACAGCAACAAGTACACCACATGCCTAATAATATGGGTGACGGTTCTTACACTGCAAGGGAAATGCACACAAGTGATTCCCTCCCAACTGTGCCCATTCCTTCAGAGGCTGGGAAGTCCCGGCGAGGTAAACGACCAAAGGAGCCTAAGTCAGTTTCACCAAATAAGAAGGCTTCAAAAGGTACTAGAAAGGTGAAGAGGGATGACGAAGATACTCACAAGATGATGTTTGGCAAGGCTAATGAATGGAAGAGTAGTCAGGAAATGATTAATGGGAGCGAAGACCTTAACAAGCAGTTAGAGGTGACAAAGGCCGATTGGAAATCCCAGGACTTGGCATTGAACCAAGTTGCGTACGATGAGTCGACAATGCCAGCTCCCGGGTGTTCTTGTACTGGTGTTCTGAGGCAGTGTTACAAATGGGGAAATGGAGGTTGGCAATCTGCTTGTTGCACAACCACCCTTTCAGTGTATCCCCTTCCAGCAGTTCCTAACAAGAGGCATGCTCGGATAGGTGGCCGGAAAATGAGTGGAAGTGCTTTCAATAAGCTGCTTAGTCGGCTTGCTACTGAGGGTCATGATCTGTCAAACCCAGTTGACCTCAAGGACCATTGGGCCAAACATGGTACAAATCGGTATATCACGATAAAGTAG 1020 0.4676 MDDAGHRENGRHKADQYKSSPGQWLMQHQPSMKQIMALMAERDALIQERNLALSEKKAALAERDMAFLQRDAAITERNNALIERDNAIAALQYRENSLTNSSMPSSCPPGCQISRGIKHMHHPQQQVHHMPNNMGDGSYTAREMHTSDSLPTVPIPSEAGKSRRGKRPKEPKSVSPNKKASKGTRKVKRDDEDTHKMMFGKANEWKSSQEMINGSEDLNKQLEVTKADWKSQDLALNQVAYDESTMPAPGCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLATEGHDLSNPVDLKDHWAKHGTNRYITIK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0088 339 MobiDBLite consensus disorder prediction 120 195 - -
Ahy16g0088 339 MobiDBLite consensus disorder prediction 126 153 - -
Ahy16g0088 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 209 - -
Ahy16g0088 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 214 339 - -
Ahy16g0088 339 MobiDBLite consensus disorder prediction 160 176 - -
Ahy16g0088 339 PANTHER - 1 209 IPR010409 -
Ahy16g0088 339 PANTHER - 214 339 IPR010409 -
Ahy16g0088 339 MobiDBLite consensus disorder prediction 1 15 - -
Ahy16g0088 339 MobiDBLite consensus disorder prediction 1 22 - -
Ahy16g0088 339 Pfam GAGA binding protein-like family 1 339 IPR010409 -
Ahy16g0088 339 Coils Coil 51 78 - -
Ahy16g0088 339 SMART GAGA_bind_2 1 339 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0088 Ahy-Chr16 841274 845348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0088 65 339 BBR or BPC Transcription factor family AT5G42520 61.592 7.23e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Ahy16g0088 GAGA_bind 2.20E-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0088 - - gmx:100783502 583.178