Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0042 ATGGTTAACACAACGGAATCTTCCTCTAACCACCACTCCCCGCCGATGACGGCGGTGCCACCTGAATCCGACAGCCCCAAGTTCCCGCGAAAAAATCTCCCTTCTCCATGGGCTCAGGTTGTCCGCGGCGCCGAGCCTGAATCCACTGCCGGGACTCCCCAATCGCCGCCGCCACCGCCACCATCGTCTGCCTCCTCCTCCTCCTCCCTTGCTGCCAGCTTCGCGTCAGTCCCGGAGCAGCTGCCTTCTTCAGATTCCTCCTCCCCAAAGGCAGTAGCTGTCTCGCCGCCGGTGGACAACAGGAGTGTTGTGGCGGCTCCTCCCGATAGCTCCGATGGCGGTGAGGGCAATGCGGGTAGGTCTAAGAAACCCGCTTGGAACAAGCCTTCAAACGGCGTCGTATCTGAGGCCGGTCTTGTGATGGGAGGGTCATGGCCTGCTCTGTCTGAATCTACCAAAGGGACTCCCAAATTGGCGGCTGAACCATCTTCCAAGACTGCCTTAGATGCATCGCTCTCCACATCTCAGGGTCCTGTAACTTCGAACTCTCCCCAAAGACAAGCTACTAGCCATGCAAAACCCAACTCTGCAACAACTTATAACATACCTAATAGGCAAAGACCAATGAAGCGTGGAGGTGGCAGCAGCGTTGGGTCTGGTCCTTCTTCAAGCGGCTTTCCCAATGTTGCGCCACCTCCACCGCCCTTTCCTGTATACCCAGTTCCTGCACCTGCAATTGGTTACGGTAATGTCATGCCGGGAGCTCCAGACCATTCTCCAAGAGATCATTATCGTCGTAATACCTGGGATGCAAGACCACCTGTTGGGAATTTTGTGCCTCCAATGACTGAACATCGGGGTTCATCTCGCCGGGGTAATTTTGGGTCCCATCCTAGGGGAGATGGCTCCTATCATAATAATTATGGTAGTAGGCGTGATCATGATCGTGCCAATTATGGGAATGCTAGAGATGCTCATGTACACCAACCAGGGGGAATATTGAGGCACCCACCACCGAATGCTCCTTCATTTGTTAACCCTGCACATGTTGGATCCTCACCCTATGCTAACCACATGGGCTTCCATGGTCCAGACTTATTATATGTTTCACCAGTACAAGTAGATCCCATGAGGAGCATGCCATTCTTTCCTTCCACTCCTACTCCTCCTTCTCCTCCTCCTCCTCCTACGATGTTCTTCCATGCAGAAACTTCTTCTCCTCTTAACAATATGATTATCAAGCAAATTGAATACTACTTTAGTGATGCTAATTTAGTAAAAGATGAATATTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCCATTACGTTGATAGCAAACTTTCCTCGCGTTAAAAATTTAACAAGTAACATCCCATTGATACTGGATTCATTAAGAGGTTCAGCTATTGTTGAAGTGCAAGGTGACAAGCTAAGGGTGACAAGCTAA 1452 0.5076 MVNTTESSSNHHSPPMTAVPPESDSPKFPRKNLPSPWAQVVRGAEPESTAGTPQSPPPPPPSSASSSSSLAASFASVPEQLPSSDSSSPKAVAVSPPVDNRSVVAAPPDSSDGGEGNAGRSKKPAWNKPSNGVVSEAGLVMGGSWPALSESTKGTPKLAAEPSSKTALDASLSTSQGPVTSNSPQRQATSHAKPNSATTYNIPNRQRPMKRGGGSSVGSGPSSSGFPNVAPPPPPFPVYPVPAPAIGYGNVMPGAPDHSPRDHYRRNTWDARPPVGNFVPPMTEHRGSSRRGNFGSHPRGDGSYHNNYGSRRDHDRANYGNARDAHVHQPGGILRHPPPNAPSFVNPAHVGSSPYANHMGFHGPDLLYVSPVQVDPMRSMPFFPSTPTPPSPPPPPTMFFHAETSSPLNNMIIKQIEYYFSDANLVKDEYLRSNMDEQGWVPITLIANFPRVKNLTSNIPLILDSLRGSAIVEVQGDKLRVTS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0042 483 PANTHER LUPUS LA PROTEIN-RELATED 48 480 IPR045180 -
Ahy16g0042 483 Gene3D - 400 483 IPR036388 -
Ahy16g0042 483 CDD LAM 410 481 - -
Ahy16g0042 483 MobiDBLite consensus disorder prediction 1 229 - -
Ahy16g0042 483 SUPERFAMILY "Winged helix" DNA-binding domain 400 481 IPR036390 -
Ahy16g0042 483 MobiDBLite consensus disorder prediction 252 348 - -
Ahy16g0042 483 MobiDBLite consensus disorder prediction 1 16 - -
Ahy16g0042 483 PANTHER LA-RELATED PROTEIN 1B 48 480 - -
Ahy16g0042 483 MobiDBLite consensus disorder prediction 306 322 - -
Ahy16g0042 483 SMART la 406 482 IPR006630 -
Ahy16g0042 483 ProSiteProfiles La-type HTH domain profile. 402 483 IPR006630 -
Ahy16g0042 483 Pfam La domain 412 467 IPR006630 -
Ahy16g0042 483 MobiDBLite consensus disorder prediction 65 93 - -
Ahy16g0042 483 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0042 Ahy-Chr16 371942 376175 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0042 K18757 - gmx:100785504 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0042 16 371942 376175 Ahy16g0042 16 371942 376175 ECH
Ahy16g0042 16 371942 376175 Ahy6g1299 6 19620345 19624713 hybridization
Ahy16g0042 16 371942 376175 Ahy17g2236 17 108273863 108276496 PCT
Ahy16g0042 16 371942 376175 Ahy8g0146 8 2722468 2725188 PCT
Ahy17g2236 17 108273863 108276496 Ahy16g0042 16 371942 376175 PCT
Ahy8g0146 8 2722468 2725188 Ahy16g0042 16 371942 376175 PCT