Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0037 ATGGCACTAAGGGGTGGTGGGAGAAGGATAACAATGGCAAAATTTATTCTTGTTTTGGCCACCTTCATTGGATTATGCAGTTTCACATATGCTTTCTCAGCTTCAAGTTGGACCAATGCCCATGCCACCTTCTATGGGGGTAGTGATGCCTCAGGAACTATGGGAGGAGCATGTGGGTATGGGAATCTGTATGCAACTGGGTATGGGACGAGAACTGCGGCTTTGAGCACAGCCTTGTTCAATGATGGAGCCTCATGCGGAGAATGCTACAAGATCATCTGTGATTACAAAGCAGACTCAAGATGGTGCATCAAAGGAAGATCAGTCACCATAACCGCCACAAACTTTTGCCCTCCTAACTTTGATCTTCCCAATAACAATGGAGGGTGGTGCAACCCACCTCTGAAGCACTTTGATATGGCTCAACCAGCATGGGAAAAGATTGGCATCTACAGAGGAGGCATCGTCCCCGTCCTGTTCCAAAGGGTGCCATGCAAGAAGCATGGAGGGGTTAGATTCAGCATAAATGGGAGAGACTACTTTGAGTTAGTGTTGATAAGCAATGTGGGAGGTGCTGGATCCATCCAATCAGTGTCCATAAAGGGATCAAAAAGTGGGTGGATGGCTATGTCAAGAAACTGGGGTGCTAACTGGCAATCCAATGCATATTTGAATGGCCAATCTTTGTCATTCAGGGTCACTACTACTGATGGAGAAACTAAGCTTTTCAATGACATTGTTCCATCTAACTGGGGATTTGGCCAAACTTTCTCTAGCCCTGTTCAGTTCTCATAA 795 0.4604 MALRGGGRRITMAKFILVLATFIGLCSFTYAFSASSWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGRSVTITATNFCPPNFDLPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSINGRDYFELVLISNVGGAGSIQSVSIKGSKSGWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGETKLFNDIVPSNWGFGQTFSSPVQFS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0037 264 Gene3D - 170 264 IPR036749 -
Ahy16g0037 264 Gene3D - 25 166 IPR036908 -
Ahy16g0037 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 170 IPR007112 -
Ahy16g0037 264 PANTHER EXPANSIN 16 263 - -
Ahy16g0037 264 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Ahy16g0037 264 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Ahy16g0037 264 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Ahy16g0037 264 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Ahy16g0037 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Ahy16g0037 264 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Ahy16g0037 264 SUPERFAMILY Barwin-like endoglucanases 28 188 IPR036908 -
Ahy16g0037 264 SMART dpbb_1 72 160 IPR007112 -
Ahy16g0037 264 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
Ahy16g0037 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Ahy16g0037 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Ahy16g0037 264 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 109 119 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Ahy16g0037 264 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Ahy16g0037 264 Pfam Lytic transglycolase 72 159 IPR009009 -
Ahy16g0037 264 PANTHER EXPANSIN-A15 16 263 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0037 Ahy-Chr16 350314 351514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0037 72 263 Expansin Gene Family AT1G20190 82.812 7.25e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0037 - - gmx:548040 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0037 16 350314 351514 Ahy16g0037 16 350314 351514 ECH
Ahy16g0037 16 350314 351514 Ahy6g1304 6 19649544 19650882 hybridization
Ahy16g0037 16 350314 351514 Ahy17g2233 17 108127740 108130013 PCT
Ahy16g0037 16 350314 351514 Ahy8g0149 8 2749435 2751112 PCT
Ahy17g2233 17 108127740 108130013 Ahy16g0037 16 350314 351514 PCT
Ahy8g0149 8 2749435 2751112 Ahy16g0037 16 350314 351514 PCT