LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g0024	ATGGCGGCGACAACAACCGAAAACGTATTGAAAGAAACGGTGCAGCGATATGAAGAAGACGCAAGCGACGATAAGAGCTTCGAGGAGCTCGGTGTGGACGCTCGTCTCATTCGTGCCTTGCTCAAGAAAGGAATCGACAAGCCCACACCAATTCAGAGAGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCGAAGACAGGTTCTGGGAAGACGTTTGCTTACCTTCTCCCCATGCTACAGAAACTATTCGCTAATGTTGATCGCAAGAAGCAGGCACCCAATGCTTTTGTTCTTGTTCCGACTCGCGAGCTGTGTCAACAGGTCTACGCAGAGGTTGTGTCACTCATTGAGTTATGCCGAGTTCAACTGAAAGTCGCCCAATTGAATAGCAATATGCAAGCTTCTGATCTGCGTGCAGCTCTGACTGGACCTCCTGATATTTTGATATCCACACCTGCTTGCCTAGCAAAGTGCTTGTTTGATGGTGTACTTCAACCAGCTTCCATTAATGCTACGCTTGAAACTCTAATTCTTGATGAGGCAGATCTTCTGTTATCATATGGATATGAAAATGATATAAAATCTTTTACGCCTCATTTACCCAGAAGTTGCCAGTGTCTTCTTATGTCCGCAACATCAAGTACTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCATTCATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGACGTCATCCCAAAAAATGTTCAGCAGTTCTGGATCTCGTGCCCTGCCAATGATAAATTGCTCTACACCCTTGCTGTTTTGAAGTTGGAGTTAGTGCAAAAAAAAGTTCTGATATTCACTAATGACATAGACATGAGTTTCAGATTGAAATTGTTCCTAGAAAAGTTTGGGATTAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCCCGACTCCATATTATTGAGGAGTTCAATGCTGGTCTGTTTGATTATCTTATTGCAACTGATGTCAGTCAGTCGAAGGAGAAGGATGAAGCACCTAAAGAAGGCAAAGGATCACGAAAGTCTAGGAAACATAAACTTAAACTCGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTCAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCGAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATATAGTTCTGGTGCTTCTATTTCTCTGGTTTCAACAGATGAGATGGAAACATTGGAAGAAGTAAAAGCTTTTGTTGGTGATGATGAAAACAAGGGCTCAAACACAATTGTGGAGTTTCCTTTCCTCACCAAGAATGCAGTTGAATCTTTGCGGTATAGGGCTGAGGACATTGGGAAGAGCGTAACTAAAATTGCTGTGCGAGAATCACGTGCTCAGGATTTGCGGAATGAAATTCTAAACTCTGAAAAGTTGAAGGCCCACTTTGAAAGTAATCCAAGAGACTTAGATCTGTTGAAACATGACAAAGTTTTAAGCAAGAATGCACCTCCTTCGCACCTGCGTGATGTGCCCAACTACCTATTAGACAAGACCACCCAGGAGGCAAGGAAAATGGTCAAGCTTGCAAGTGATGCAATGGGAAATAATAATCGTCGCAAGGGATTCAAGAAAAAACCAAAAACAGGTGGAGACCCTCTGAAGGCTATCTCTGCTGCGGTATCAAAAAGATCGCACAAAGGTGGAAGCCACAACAATACCGGTGGTAGACATAAGCACAAAAAGACTGACTGA	1782	0.4237	MAATTTENVLKETVQRYEEDASDDKSFEELGVDARLIRALLKKGIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFANVDRKKQAPNAFVLVPTRELCQQVYAEVVSLIELCRVQLKVAQLNSNMQASDLRAALTGPPDILISTPACLAKCLFDGVLQPASINATLETLILDEADLLLSYGYENDIKSFTPHLPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNNKDDVIPKNVQQFWISCPANDKLLYTLAVLKLELVQKKVLIFTNDIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHIIEEFNAGLFDYLIATDVSQSKEKDEAPKEGKGSRKSRKHKLKLDSEFGVVRGIDFKNVFTVINFDMPRSVAGYVHRIGRTGRAYSSGASISLVSTDEMETLEEVKAFVGDDENKGSNTIVEFPFLTKNAVESLRYRAEDIGKSVTKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPSHLRDVPNYLLDKTTQEARKMVKLASDAMGNNNRRKGFKKKPKTGGDPLKAISAAVSKRSHKGGSHNNTGGRHKHKKTD*	594

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g0024	593	SMART	helicmild6	293	405	IPR001650	-
	Ahy16g0024	593	PANTHER	ATP-DEPENDENT RNA HELICASE DDX56-RELATED	21	529	-	-
	Ahy16g0024	593	SMART	ultradead3	44	256	IPR014001	-
	Ahy16g0024	593	CDD	DEADc_DDX56	32	238	-	-
	Ahy16g0024	593	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	269	451	IPR001650	-
	Ahy16g0024	593	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	24	237	IPR027417	-
	Ahy16g0024	593	Pfam	Helicase conserved C-terminal domain	264	405	IPR001650	-
	Ahy16g0024	593	MobiDBLite	consensus disorder prediction	539	593	-	-
	Ahy16g0024	593	Pfam	DEAD/DEAH box helicase	49	225	IPR011545	GO:0003676\|GO:0005524
	Ahy16g0024	593	CDD	SF2_C_DEAD	253	414	-	-
	Ahy16g0024	593	Gene3D	-	241	443	IPR027417	-
	Ahy16g0024	593	Gene3D	-	2	238	IPR027417	-
	Ahy16g0024	593	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	248	428	IPR027417	-
	Ahy16g0024	593	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	25	53	IPR014014	GO:0003724
	Ahy16g0024	593	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	56	236	IPR014001	-
	Ahy16g0024	593	PANTHER	RNA HELICASE	21	529	-	-
	Ahy16g0024	593	MobiDBLite	consensus disorder prediction	579	593	-	-
	Ahy16g0024	593	Coils	Coil	475	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g0024	Ahy-Chr16	243334	250787	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g0024	26	428	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.551	7.86e-38	143

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g0024	K14810		-	gmx:100800749	932.169