Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0015 ATGGCAAGTCAGGGCTCTAATGAAGGCTCTAGTTCCGGCATTACATCGGCTGAGTGTTCGGATTCAACTGTTCAACTCAACATCAAGACTCTAGATTCACGGGTCTATAATTTTCAACTGGACAAAAATATGCCTGTTTCGTTGTTAAAGGAGAAAATTGCAAATGAAATTGGTCTTCCAGTTGGTCAGCAACGGCTGATTTTTAGAGGAAAAGTCTTAAAGGACGAGCATGTGCTATCTGAGTATCATATCGAGAATGGGCATACCTTGCATCTAGTTGAAAGGCAACCAAATCAGTCACAGGCTTCTGGTAATAGTACTGCTGAGCCAGCTGGTGCTAATGGTAATGCAGGAAATGATGCAGCCTCCGTGCCTCCTCGTAACCGTGTTGGACAAATTTCACACAGTGTTGTTCTTGGAACTTTTAATGTGGGGGACCAAGGGGAAGGCATTGTTCCTGACCTTACACGGGTTATTGGGGCAGTTTTGAATTCTATTGGAATTGGTGGTCGAACACAAGTAGTCCTCCCAATGCTACCCAACCTGCTACAGTTAGTATGCGTGGCTTGTATTCCTTAG 579 0.4439 MASQGSNEGSSSGITSAECSDSTVQLNIKTLDSRVYNFQLDKNMPVSLLKEKIANEIGLPVGQQRLIFRGKVLKDEHVLSEYHIENGHTLHLVERQPNQSQASGNSTAEPAGANGNAGNDAASVPPRNRVGQISHSVVLGTFNVGDQGEGIVPDLTRVIGAVLNSIGIGGRTQVVLPMLPNLLQLVCVACIP* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0015 192 MobiDBLite consensus disorder prediction 96 113 - -
Ahy16g0015 192 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Ahy16g0015 192 Gene3D - 13 108 - -
Ahy16g0015 192 MobiDBLite consensus disorder prediction 96 126 - -
Ahy16g0015 192 CDD Ubl_ubiquitin_like 26 93 - -
Ahy16g0015 192 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Ahy16g0015 192 PRINTS Ubiquitin signature 76 97 IPR019956 -
Ahy16g0015 192 PRINTS Ubiquitin signature 55 75 IPR019956 -
Ahy16g0015 192 PRINTS Ubiquitin signature 34 54 IPR019956 -
Ahy16g0015 192 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 6 171 - -
Ahy16g0015 192 SUPERFAMILY Ubiquitin-like 12 98 IPR029071 -
Ahy16g0015 192 PANTHER OS07G0498800 PROTEIN 6 171 - -
Ahy16g0015 192 SMART ubq_7 24 95 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0015 Ahy-Chr16 153911 156414 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0015 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.889 7.63e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0015 - - ahf:112754422 367.466